Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111195077 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035916.1 |
| NCBI id | CM008319.1 |
| chromosome length | 36262418 |
| location | 24598873 ~ 24599611 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0044428 | obsolete nuclear part | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU242343 | False | 630 | lncRNA | 0.45 | 2 | 24598875 | 24599608 |
| XR_002651474.1 | True | 635 | lncRNA | 0.45 | 2 | 24598873 | 24599611 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103034699 | NA | coding | upstream | 2278 | 24590973 ~ 24596595 (+) |
| lmnb1 | lmnb1 | coding | upstream | 56623 | 24524813 ~ 24542250 (+) |
| phax | phax | coding | upstream | 89293 | 24505637 ~ 24509580 (+) |
| trnam-cau_40 | NA | coding | upstream | 96928 | 24501874 ~ 24501945 (+) |
| gramd2b | gramd3 | coding | upstream | 115990 | 24472206 ~ 24482883 (+) |
| megf10 | megf10,LOC107705845 | coding | downstream | 4045 | 24603656 ~ 24676046 (+) |
| prrc1 | prrc1,LOC107572184,LOC107705848,LOC107673757 | coding | downstream | 84466 | 24684077 ~ 24699125 (+) |
| ctxn3 | ctxn3,LOC107711251 | coding | downstream | 126466 | 24726077 ~ 24739475 (+) |
| slc12a2 | slc12a2,LOC107680742 | coding | downstream | 162796 | 24762407 ~ 24816488 (+) |
| LOC103037195 | slc27a6,LOC108277201 | coding | downstream | 384172 | 24983783 ~ 25016698 (+) |
| G178853 | NA | non-coding | upstream | 11238 | 24586507 ~ 24587635 (+) |
| G178844 | NA | non-coding | upstream | 85665 | 24512588 ~ 24513208 (+) |
| LOC111195075 | NA | non-coding | upstream | 297026 | 24298112 ~ 24301847 (+) |
| G178805 | NA | non-coding | upstream | 305529 | 24291975 ~ 24293344 (+) |
| G178781 | NA | non-coding | upstream | 407616 | 24187986 ~ 24191257 (+) |
| G178873 | NA | non-coding | downstream | 58796 | 24658407 ~ 24678663 (+) |
| G178896 | NA | non-coding | downstream | 195872 | 24795483 ~ 24817313 (+) |
| G178928 | NA | non-coding | downstream | 361687 | 24961298 ~ 24962524 (+) |
| G178938 | NA | non-coding | downstream | 423429 | 25023040 ~ 25023262 (+) |
| LOC111195079 | NA | non-coding | downstream | 424532 | 25024143 ~ 25029674 (+) |
| LOC103032894 | LOC108424565 | other | upstream | 144251 | 24447792 ~ 24454622 (+) |
| G178485 | NA | other | upstream | 1633884 | 22963447 ~ 22964989 (+) |
| G178388 | hmgcs1,LOC108427280,LOC108277226,LOC107737058 | other | upstream | 1889316 | 22689001 ~ 22709557 (+) |
| G178352 | NA | other | upstream | 2052743 | 22544640 ~ 22546130 (+) |
| LOC103022948 | hnrnpd,LOC108440733,LOC108276832,LOC107702593 | other | upstream | 2096714 | 22493440 ~ 22502159 (+) |
| smpd1 | smpd1,LOC107718723,LOC107720657,LOC107556869 | other | downstream | 644550 | 25244161 ~ 25257469 (+) |
| LOC103024073 | LOC108424537 | other | downstream | 2231026 | 26830637 ~ 26879083 (+) |
| rnasek | rnasek,LOC107554319 | other | downstream | 2314139 | 26913750 ~ 26916344 (+) |
| LOC103038954 | zgc:101846,LOC106525086,LOC108416226,LOC101161532 | other | downstream | 2924691 | 27524302 ~ 27525441 (+) |
| G180235 | erg | other | downstream | 6539733 | 31139344 ~ 31151095 (+) |
