G178880


Basic Information

Item Value
gene id G178880
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24603651 ~ 24625825 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242362
CTTTCCCAGTGACTGCAGACATTGGGGTCATCCAGGTTCAGTGATAATGTCACTCCCAGTAGGCAGCACAATAGTGCCAGCAGGACAGAGCCACAGTGCCATGGCAGTGAGAGCATCATTGTAGGCAACACCTTCAGTTCTACTCTAAAGTCCTCGTCCTCTCCAAACTCATGGATCCGCTGTGAGAAGAAGCTGATCTGCACTTGACTGAAAAAGTTCCTCTAAGAGCAGCTTCTTCACAGCAGCTTCTCTGATCATCAAACTGCAGCAATATTCCCTCTCACTGCGGAGAACTTCAGTGAAAGTGCGGGTTTAGTGAGCTGGATcagtgtgaatgagtgtgtttaCAGAGTGAGGGAAACAGCTGAGGGGTCTCCCCGATagcatctcctcctcctcctcctgagcGCTGTTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242362 True 418 lncRNA 0.50 2 24603651 24625825

Neighbor

gene id symbol gene type direction distance location
c20h5orf63 NA coding downstream 13988 24587260 ~ 24589663 (-)
march3 march3 coding downstream 17246 24547003 ~ 24586405 (-)
LOC103023834 LOC108424422 coding downstream 87053 24511831 ~ 24516598 (-)
aldh7a1 aldh7a1 coding downstream 103222 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 314358 24252134 ~ 24289293 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 336801 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 420389 25046214 ~ 25052132 (-)
LOC103039311 LOC103039311 coding upstream 544598 25170423 ~ 25178447 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 678623 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 733407 25359232 ~ 25363323 (-)
LOC111195076 NA non-coding downstream 1336 24595245 ~ 24602315 (-)
G178868 NA non-coding downstream 19982 24582485 ~ 24583669 (-)
G178862 lmnb1 non-coding downstream 60904 24524930 ~ 24542747 (-)
G178864 NA non-coding downstream 70463 24530794 ~ 24533188 (-)
G178859 phax non-coding downstream 94141 24505065 ~ 24509510 (-)
G178890 NA non-coding upstream 48826 24674651 ~ 24678699 (-)
G178900 prrc1 non-coding upstream 58281 24684106 ~ 24689547 (-)
LOC111195078 NA non-coding upstream 95388 24721213 ~ 24726656 (-)
G178913 NA non-coding upstream 136647 24762472 ~ 24763107 (-)
G178914 NA non-coding upstream 142126 24767951 ~ 24819326 (-)
sh2d4a sh2d4a other downstream 1646425 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1661987 22935490 ~ 22941664 (-)
G178450 NA other downstream 1930968 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2093868 22501318 ~ 22509783 (-)
G178426 NA other downstream 2146872 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 505157 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 577500 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 667850 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 738107 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 1030430 25656255 ~ 25864474 (-)

Expression


Co-expression Network