G178900 (prrc1)


Basic Information

Item Value
gene id G178900
gene name prrc1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24684106 ~ 24689547 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242397
GTGCACTGGAAAAGCTAGGCATTAGTGGCGTCTGTGGCGTGCGACCAGCGTGTCCACGAGTAATATCATAGCCTGCACTCATAGCAAAGCCAGTTGTGGGTGGGCCCATAGGTGGAGCAGTAAAGGCTGGTCCTGGAGGAGGTGCAGTGGAACTGAGAGGAGGAGCCATAGCTGGGGAGGAGAAGTGGGTCATGGGACTGCTGTACGGCACACCTCCACCCAGTGGAGGAGCAGTGGCTGGGGAAGCTGTGGACAGAGGGTTCATGGGGCTGAGAGTAAACGGAGGAGGAGCAGAGGAATGAATTGGAGGCAGGGTGGAGGTCACTGCTGCAGGGCGTACTGGAGTGGAGTAGCCTTCTGGGACAAAGCTGGAGATGCCTGTGGTGTTGGGAAGGGTCAGTGGAGCAGACAGACCCACTGTGAGAGGAGGAGGACTAACAGCAGCGGCCACACTGGGGGGAGGTGGAGGAGTGGTTGGTGGGGTAGTCTCTATTCCACTCTCTTCCATCATCTTTCCTCAATCCTGGCGCTTTTGTCTCCTTAATCAAACCCACACAACACGAAATCACATCCACCAACTCCAGACCCCAACTCTACCGACC

Function

symbol description
prrc1 Enables protein kinase A regulatory subunit binding activity. Acts upstream of or within activation of protein kinase A activity; epithelial structure maintenance; and somite specification. Located in Golgi apparatus. Is expressed in several structures, including axis; early embryonic cell; gonad; paraxial mesoderm; and tail bud. Orthologous to human PRRC1 (proline rich coiled-coil 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242397 True 602 lncRNA 0.57 3 24684106 24689547

Neighbor

gene id symbol gene type direction distance location
c20h5orf63 NA coding downstream 94443 24587260 ~ 24589663 (-)
march3 march3 coding downstream 97701 24547003 ~ 24586405 (-)
LOC103023834 LOC108424422 coding downstream 167508 24511831 ~ 24516598 (-)
aldh7a1 aldh7a1 coding downstream 183677 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 394813 24252134 ~ 24289293 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 273079 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 356667 25046214 ~ 25052132 (-)
LOC103039311 LOC103039311 coding upstream 480876 25170423 ~ 25178447 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 614901 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 669685 25359232 ~ 25363323 (-)
G178890 NA non-coding downstream 5407 24674651 ~ 24678699 (-)
G178880 NA non-coding downstream 58281 24603651 ~ 24625825 (-)
LOC111195076 NA non-coding downstream 81791 24595245 ~ 24602315 (-)
G178868 NA non-coding downstream 100437 24582485 ~ 24583669 (-)
G178862 lmnb1 non-coding downstream 141359 24524930 ~ 24542747 (-)
LOC111195078 NA non-coding upstream 31666 24721213 ~ 24726656 (-)
G178913 NA non-coding upstream 72925 24762472 ~ 24763107 (-)
G178914 NA non-coding upstream 78404 24767951 ~ 24819326 (-)
G178916 slc12a2,LOC107754974,LOC107680742 non-coding upstream 102123 24791670 ~ 24792839 (-)
G178924 NA non-coding upstream 260837 24950384 ~ 24954222 (-)
sh2d4a sh2d4a other downstream 1726880 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1742442 22935490 ~ 22941664 (-)
G178450 NA other downstream 2011423 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2174323 22501318 ~ 22509783 (-)
G178426 NA other downstream 2227327 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 441435 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 513778 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 604128 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 674385 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 966708 25656255 ~ 25864474 (-)

Expression


Co-expression Network