G178913


Basic Information

Item Value
gene id G178913
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24762472 ~ 24763107 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242411
GGGGAGAGGCTTGGCGTCGGTGCTGTGGAAGCAGGAGAAGCCGCTTCCAGTGAGCCAACGTTGACGTGCGGCTAGTTAGTTTACTAAAAGTAGTAACGTTATAGTGATGCGCTAGCTAGTTattgtctctcacacactcatacacacactctcccacagtccctctctctcacacacaccgaAAGAAAGCGCTTAGCCAGCTAACCCAACTAACTAACGTTAGCTTCTCTATTTTCCTCACAGAAAACCGGTCCGTTTTACCTCTTTCCAACAGTCCTTCTGTTTAAACTGTAACGGCCGATTTGAACGAGGCTAATGTTCGGAAGCTCGCGCACTTCTCGTGTTTCTTGGCGCGAGAGGCATCCACCAGTCCAGCTTCCAGATCCGGATGAGCTTTTAAAGCCGTGCTAAAGAAAACAATACGGAGCTACACACACAGCGCGAGCTCGCCGCTCTCCAGCCACGCGGATGATATTAAGCTATCTGTGTGAGTTCTGCTGGGTGATGTtgattagctagctcgctagtTAGTTGCCGTGTGATGATGCTATTGTCGTCCTTGCCGCAACTCGTCCTCGCGCTACGGCTGCTCTCGCGCTGCCGCTATATAGctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242411 True 615 lncRNA 0.51 2 24762472 24763107

Neighbor

gene id symbol gene type direction distance location
c20h5orf63 NA coding downstream 172809 24587260 ~ 24589663 (-)
march3 march3 coding downstream 176067 24547003 ~ 24586405 (-)
LOC103023834 LOC108424422 coding downstream 245874 24511831 ~ 24516598 (-)
aldh7a1 aldh7a1 coding downstream 262043 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 473179 24252134 ~ 24289293 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 199519 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 283107 25046214 ~ 25052132 (-)
LOC103039311 LOC103039311 coding upstream 407316 25170423 ~ 25178447 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 541341 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 596125 25359232 ~ 25363323 (-)
LOC111195078 NA non-coding downstream 35816 24721213 ~ 24726656 (-)
G178900 prrc1 non-coding downstream 72925 24684106 ~ 24689547 (-)
G178890 NA non-coding downstream 83773 24674651 ~ 24678699 (-)
G178880 NA non-coding downstream 136647 24603651 ~ 24625825 (-)
LOC111195076 NA non-coding downstream 160157 24595245 ~ 24602315 (-)
G178914 NA non-coding upstream 4844 24767951 ~ 24819326 (-)
G178916 slc12a2,LOC107754974,LOC107680742 non-coding upstream 28563 24791670 ~ 24792839 (-)
G178924 NA non-coding upstream 187277 24950384 ~ 24954222 (-)
G178927 NA non-coding upstream 193786 24956893 ~ 24959621 (-)
G178954 NA non-coding upstream 198058 24961165 ~ 24962530 (-)
sh2d4a sh2d4a other downstream 1805246 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1820808 22935490 ~ 22941664 (-)
G178450 NA other downstream 2089789 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2252689 22501318 ~ 22509783 (-)
G178426 NA other downstream 2305693 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 367875 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 440218 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 530568 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 600825 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 893148 25656255 ~ 25864474 (-)

Expression


Co-expression Network