G178914


Basic Information

Item Value
gene id G178914
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24767951 ~ 24819326 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242412
tattttgatttttatttattgcaataaagATGTACAAAGTATTGGTAaccttaaatgttaaaatgttagaaaaaaagcatatttgtgacaataaacagtacagtatatcaaAACATTCCTCATCCAGCCAAATCAGTTCGATCCATCCTTTATGCTTGAACAGTTGTTAAACTCAACCACTTGTCAACATAGCTTTTCTTTAAAAGGCATATAAAAGATAGAAATGtacagagagaaggaggaacaaaagtttttaaagtaatcaaaaatgaaacaaaaaaaaataatcaacatGCAATTTAAAAACAAGAAGTTAGAGAAAACTCTACggctaaaataaatatttcttttcTCCTTAGTAATTTgccattgttattattattattccactcCCTTAATTTATCTGGTTAGACTAGAAGATATTTAAAGGTTAGTAAAGAAATACAGTGTGAACTGAAGTCGAGAGCAGTGAGGCTGACTTTACTTTTcctcattatcatcatcatcatcatcatcacgaCTCCTGGCTCTGATGGAGTGGAAGGAACTAGGCTTTGGCTACACATGAGcagaaaatgttgaaaaaagaaaaaaaaagaaaagaaaaaaggcatGACCAtgagtgaaaaaataaaacacacacagttgaTCTGTTTGGTCTCAACACAGAATACAGCACAGCGTTTAGAGGCACATCAGTCAGCAGTACCTCATCAACCCATGGTGTATACAAGTAGCTTCTGATGCCACAGCTAAACACTTATGTGTAGCTATACACTGATGAATAATGCACACTTacttacaaacacacattgTGGTCTTTACACATATTTATAGCAAATTATCTTGACATCCAAATATGTCTCCCAATTTtgactatatataatatatatatgatggttaatttcttaatttagttttaattttttttgtttttttgtagtcGTTAGGGGATTTAAGGTCtatacagccacacacacacactcatgcgcgcacacgcacgcacgcacacacctTAAAACAAGTAAGACTGTACCATATGAAGTCAAAAGAGCTTCACAATGCCCActgtcttgaaaaaaaaaaaaagtaaactacGTGTCACACACTAAAGTACAAAGTCCTTTTACACACTAGAGtagaatatatatgtatatttatatatatatatatatatatatatatttagcaagagaaagagagctataaatatgaatatattcaTTCAAATGTTCATGGCATATTTTTCACATTGGTGATTGGTGATAAACGTGAAACTGGAGATGCAGTCGTGTGGGTACTGGTTACTACACAGTCTGACAACACACATCACAGCATTAAGCTTGCATTTGGGCCACTTTCGATGTAACAAAGCTGaaacgcaaaaaaaaagaagaaaaaaaaggaattttaaAAATTGAGTGTGATGAAAGGACACAAAAGAACAACAAAACGGAGCATTGCCTCTTTTCAGAATTAGTGTCTACATTCAAGCAACCTTTCGTTAAAGCAACGTCACATTTCACACAATGAACAGTAGAGCGAGTGCAGAAAGGAGGCAAACTTGTGCACAAATCTAAACCAGTTCATGGTAGAATTTTACTGTAAGGCAATCTGAGTCATTTCATTCTTAGTTCTAATATGACACTGGCAAGAAATGGAATCAACTCTTCACATTAACCTGGTCAATATCGTCAAGTTCAGCTGCATAAAACCTTTCCACCTTCCACAAGACCACCAACCCACTAAACGCGCATCattatcttcatcttcatcatcactgATTAGGACTGGAAAAAGCACTGCAGGCGGAAAAGATCCAAGTTCTGGGATAAGTGACTTTCTTAAAATACCATCGTTTAAGTGGGAAACGAGTAGCACTCATCTCATTTAACCTGCATAGAGGTAtatatactgtgatacacacatacatacatacacatccCATTTGATACATGTgaacaaacaaaccaaccaaacaaacaaacaacattcTCAGTTCTGGCTTCAGTCAACACTCCCAAGACATCCTGTCTGTAATAATCTGTGGCGTGgtctttattttcattattattaacagCAGCTGCAATACCTGAACAGGCCTTTAGAATTACACTGCACAAGACAAGGAAGCCCCTAAGTTGTACACGCAAATatgcaggaaaaaaaagcagCTACTCTGTAAAAGTCCAACACACGGGAACAAAGACAGGAATGTTGCTTCACGTTGGTTCAAGTCACTGTTGACATAGTTTACTTTGTAGCTACAACTGGATTTCTTAATCAATAAAAAGTGGTCCACGACTACTACAGATTGGAGAGAGTTTAGTTTTAATGAAATACACACGGATTCatgaaatgaaaaaacattGCGACTGATGTTACATTCAGTTTTCTGCATCTATTAATTCTCTATAATCTGCGTTTACCCGCTAATCAATCAGACAACCAGCCAGTATGGCTTATAAGAGAGAGAAGTTAAAGTCAACAAtcattactttcacttttaagGCAAATTCATCCTCTGTAGTAAGACCTGCAGGCTTGTGGAATtgcgaaaaaaaagaaaagaaaaaaattcaagaGGTCACATCATATTTGGTTGATTGTTCTTTGTGTATCCATCGTTTAATAGCAGCTTTGATGTGCCACTCTTTTGAGACaccttttctatatttaacatttaaaataagaacCTTCCAGCACATCTTTAAACCATAGGCTGTTGCTCTGCACTCAAGTCATAATCAAGTAATGCAGCATTCTGTTCGGACTGCCCTTCAACCCTGTACATTAGAATTCATTCACCCTCCAACTCTGATTACCGTAACATCCAGGAGAAGTGGAGGAGTATACTGTACTAGGAACACTAAAATCCCTTCACAGTTTAAAGGAAGACTGAAAcctggaaaagaaagagagacagggcaAAAGATGACAGGGGAAAAATTTTACCTCAccggaaaaaaaagaagctttttTTATGCTCAAAAGTGGAAATGTTTCCCAACGCCCTTCCACTCGCataaaaaatcctaaaatctTGAGTATACCTAAAACCCAATTTAAAAATAGTCTACTACAGCTACGTTCATTTGAGCATCAATCGTGgcaatgtttaataatttaatttgattgaaCTGGAAGGCACATCTATAAGGCTATAAAAGGTGTTGCAAAGCATTCTGCATGGTTTTCTCCCGAGTGAGGAAAAGGAAAACAGGATGATTATTGCTGCTTCGaagagcaaataaaaaaaaaatcaagaaaaaaaaagtgaatatcCAAAATTTCTTTGTGACaaacataataatgataatgataatcaGAACAGCAATGTGTACTTCATGCTCAGATGCCTGTGATCCAAAGAAAACAGTGACCAATAAATTACTGAGCACGTTTCTCATCTTGTCCTCTATTGTCCGGAATATTCCAGAAGTATACCCTGTACACTCACAACTTCGGCATCCGTGGAGTGTCACATGGCAGGGGTCACTGAGCTACAGAAACCAAAAGCTTCTCAAGAGAACGTGCTCCTAGTCTCTCTTGACCATCACCATCATTACTATCCTAGTGGTCACAGGTGGTCTACCTTCATGTGTTGGTGTGTGCACGTTTGTGTTTAGTGTCGGCATATCAGCGAGGTGTGCTTCACGAGGGGGGCGGTGATCGTCAATTCGCTTAGGAGTAGAATGTGAGGACGCTCTGGTGGTTGCCACGAACAAGGAGGATGGGTGGAAGGTCCTTGGACAGGTTGTCCAACCAGGACATGTAGAGGGCACTGGATACGGCCCCCTTTCTTGCCA
>TU242414
tattttgatttttatttattgcaataaagATGTACAAAGTATTGGTAaccttaaatgttaaaatgttagaaaaaaagcatatttgtgacaataaacagtacagtatatcaaAACATTCCTCATCCAGCCAAATCAGTTCGATCCATCCTTTATGCTTGAACAGTTGTTAAACTCAACCACTTGTCAACATAGCTTTTCTTTAAAAGGCATATAAAAGATAGAAATGtacagagagaaggaggaacaaaagtttttaaagtaatcaaaaatgaaacaaaaaaaaataatcaacatGCAATTTAAAAACAAGAAGTTAGAGAAAACTCTACggctaaaataaatatttcttttcTCCTTAGTAATTTgccattgttattattattattccactcCCTTAATTTATCTGGTTAGACTAGAAGATATTTAAAGGTTAGTAAAGAAATACAGTGTGAACTGAAGTCGAGAGCAGTGAGGCTGACTTTACTTTTcctcattatcatcatcatcatcatcatcacgaCTCCTGGCTCTGATGGAGTGGAAGGAACTAGGCTTTGGCTACACATGAGcagaaaatgttgaaaaaagaaaaaaaaagaaaagaaaaaaggcatGACCAtgagtgaaaaaataaaacacacacagttgaTCTGTTTGGTCTCAACACAGAATACAGCACAGCGTTTAGAGGCACATCAGTCAGCAGTACCTCATCAACCCATGGTGTATACAAGTAGCTTCTGATGCCACAGCTAAACACTTATGTGTAGCTATACACTGATGAATAATGCACACTTacttacaaacacacattgTGGTCTTTACACATATTTATAGCAAATTATCTTGACATCCAAATATGTCTCCCAATTTtgactatatataatatatatatgatggttaatttcttaatttagttttaattttttttgtttttttgtagtcGTTAGGGGATTTAAGGTCtatacagccacacacacacactcatgcgcgcacacgcacgcacgcacacacctTAAAACAAGTAAGACTGTACCATATGAAGTCAAAAGAGCTTCACAATGCCCActgtcttgaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: stonustoxin subunit beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242412 True 3809 lncRNA 0.37 3 24814604 24819326
TU242414 False 1109 lncRNA 0.32 2 24767951 24819326
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Neighbor

gene id symbol gene type direction distance location
c20h5orf63 NA coding downstream 178288 24587260 ~ 24589663 (-)
march3 march3 coding downstream 181546 24547003 ~ 24586405 (-)
LOC103023834 LOC108424422 coding downstream 251353 24511831 ~ 24516598 (-)
aldh7a1 aldh7a1 coding downstream 267522 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 478658 24252134 ~ 24289293 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 143300 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 226888 25046214 ~ 25052132 (-)
LOC103039311 LOC103039311 coding upstream 351097 25170423 ~ 25178447 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 485122 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 539906 25359232 ~ 25363323 (-)
G178913 NA non-coding downstream 4844 24762472 ~ 24763107 (-)
LOC111195078 NA non-coding downstream 41295 24721213 ~ 24726656 (-)
G178900 prrc1 non-coding downstream 78404 24684106 ~ 24689547 (-)
G178890 NA non-coding downstream 89252 24674651 ~ 24678699 (-)
G178880 NA non-coding downstream 142126 24603651 ~ 24625825 (-)
G178924 NA non-coding upstream 131058 24950384 ~ 24954222 (-)
G178927 NA non-coding upstream 137567 24956893 ~ 24959621 (-)
G178954 NA non-coding upstream 141839 24961165 ~ 24962530 (-)
G178962 NA non-coding upstream 194376 25013702 ~ 25020163 (-)
G178963 NA non-coding upstream 203313 25022639 ~ 25022891 (-)
sh2d4a sh2d4a other downstream 1810725 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1826287 22935490 ~ 22941664 (-)
G178450 NA other downstream 2095268 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2258168 22501318 ~ 22509783 (-)
G178426 NA other downstream 2311172 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 311656 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 383999 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 474349 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 544606 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 836929 25656255 ~ 25864474 (-)

Expression

G178914 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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G178914 Expression in each Bioproject

Bar chart with 7 bars.
G178914 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G366488 NA non-coding CI01000161 null 1220974 ~ 1221233 (+)
rainbow trout (Oncorhynchus mykiss) slc12a2 nkcc1a misc NC_048569.1 CM023223.2 12180768 ~ 12261242 (+)
eurasian perch (Perca fluviatilis) G171759 NA non-coding NC_053128.1 CM020925.1 748556 ~ 754027 (+)
bowfin (Amia calva) AMCG00010548 NA coding CM030129.1 CM030129.1 34962348 ~ 35003888 (+)
mexican tetra (Astyanax mexicanus) G171995 NA non-coding NC_035915.1 CM008318.1 34835057 ~ 34835412 (-)