G178916 (slc12a2,LOC107754974,LOC107680742)


Basic Information

Item Value
gene id G178916
gene name slc12a2,LOC107754974,LOC107680742
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 24791670 ~ 24792839 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242418
TATACACTAAGCCAGTGATAAGAATGGCCAAAAGGGTTCCCTTAGGGATTGCCTTTTGTGGATcCGCAAGATCTCCTGAGATGTTGGCACCAGCAAGAATGCCAGTGGCTGCAGGAAAGAAGATGGAAAAGACGGAAAAGAATGTTTCTCCTCTGAAGTCCGGACCTAAATTTTCCATCATGATGCCAGCATCATAGCCAAAGAATCCATATTTTTCCTTTGACTCCAAGGGAATGAATGTGCCAATGAAGTAATTGAAGATGGCACTGATCAAGATGACCAAAAGGAAGATCTGGGCCTTAGCCTCCCACTCCATGCCGGCCACTGAGATCCCAAGTAGGATAAGGACAGTGATTGTTCCTACGATTCTGACATCATTAACTGAATCCAGCATAACAAGATCAGCACCATGAAGAAGTTCAACGACAGTTTCAGCAAAGCCAACAACATACATGGCCACTGCAACTGCATTGGCAAAGGCGAAAATAAGACCAATGGAACCACCAAATTCCGGGCCTAAACTTCGAGATATCAAATAATAGGCC

Function

symbol description
slc12a2 Enables cation:chloride symporter activity and identical protein binding activity. Acts upstream of or within inner ear morphogenesis and swim bladder inflation. Located in basolateral plasma membrane. Is expressed in several structures, including mesoderm; nervous system; notochord; otic vesicle; and pharyngeal arch. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 78. Orthologous to human SLC12A2 (solute carrier family 12 member 2).

NR:

description
PREDICTED: solute carrier family 12 member 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242418 True 545 lncRNA 0.45 5 24791670 24792839

Neighbor

gene id symbol gene type direction distance location
c20h5orf63 NA coding downstream 202007 24587260 ~ 24589663 (-)
march3 march3 coding downstream 205265 24547003 ~ 24586405 (-)
LOC103023834 LOC108424422 coding downstream 275072 24511831 ~ 24516598 (-)
aldh7a1 aldh7a1 coding downstream 291241 24489798 ~ 24500429 (-)
LOC103023192 LOC108424566,LOC108277262,LOC105901058,LOC106603267,LOC105010780 coding downstream 502377 24252134 ~ 24289293 (-)
LOC103037512 LOC103037512,LOC108423775 coding upstream 169787 24962626 ~ 24980089 (-)
kiaa1024l NA coding upstream 253375 25046214 ~ 25052132 (-)
LOC103039311 LOC103039311 coding upstream 377584 25170423 ~ 25178447 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 511609 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 566393 25359232 ~ 25363323 (-)
G178913 NA non-coding downstream 28563 24762472 ~ 24763107 (-)
LOC111195078 NA non-coding downstream 65014 24721213 ~ 24726656 (-)
G178900 prrc1 non-coding downstream 102123 24684106 ~ 24689547 (-)
G178890 NA non-coding downstream 112971 24674651 ~ 24678699 (-)
G178880 NA non-coding downstream 165845 24603651 ~ 24625825 (-)
G178924 NA non-coding upstream 157545 24950384 ~ 24954222 (-)
G178927 NA non-coding upstream 164054 24956893 ~ 24959621 (-)
G178954 NA non-coding upstream 168326 24961165 ~ 24962530 (-)
G178962 NA non-coding upstream 220863 25013702 ~ 25020163 (-)
G178963 NA non-coding upstream 229800 25022639 ~ 25022891 (-)
sh2d4a sh2d4a other downstream 1834444 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 1850006 22935490 ~ 22941664 (-)
G178450 NA other downstream 2118987 22672132 ~ 22672683 (-)
LOC103023660 LOC103023660,LOC108440734,LOC108276836,LOC106926931 other downstream 2281887 22501318 ~ 22509783 (-)
G178426 NA other downstream 2334891 22455497 ~ 22456779 (-)
G178982 hint1,LOC107665476 other upstream 338143 25130982 ~ 25134156 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other upstream 410486 25203325 ~ 25207386 (-)
thsd1 thsd1 other upstream 500836 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 571093 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 863416 25656255 ~ 25864474 (-)

Expression


Co-expression Network