G178985


Basic Information

Item Value
gene id G178985
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25135484 ~ 25135994 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242525
GTTGCATCTAGTTGTAGAATAGCATGTCCAGTGGAGGGCGCTCTTGCATTATTATCCCATTTGCTGCTGCAATTCATCAGACCCTGTCTACCATGTCCTTCAAAGGATAAAGACCACCAAAGGAACAATGCTGATCAGTGATATTTTGGTAGTGGACTATTTTCAGCACAGCTGTGATACTGGTGTGTGTACACGTTTCCTGCCCTTTACTTTTTATATGCtgccttttttctctttactttcttttattgctttttctCCTTTCACATTTATCCATGACTGTATATCTGATCTCATTCTATCCAGTAGTTCTCATTTCTCTGATGTCAGAGCTTATCTTGCCTCACATTATATGATAGATGtagctttttaaaaagcatCTGTAATCTGATTTGTGTCAGTTGTGCCAGTCTAGAGCATATGGATGGTGTAATATGGTGGACATCTCTTGAAAGGCAATGATACATTACAAGAGCTCAGACTTATGACGTGCTATCTGactaaaaagcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242525 True 511 lncRNA 0.39 1 25135484 25135994

Neighbor

gene id symbol gene type direction distance location
hint1 hint1,LOC107665476 coding upstream 1329 25131225 ~ 25134155 (+)
chsy3 chsy3 coding upstream 8361 25055847 ~ 25127123 (+)
isoc1 isoc1 coding upstream 92564 25030961 ~ 25042920 (+)
LOC103037195 slc27a6,LOC108277201 coding upstream 118786 24983783 ~ 25016698 (+)
slc12a2 slc12a2,LOC107680742 coding upstream 318996 24762407 ~ 24816488 (+)
dact3 NA coding downstream 1899 25137893 ~ 25158281 (+)
dmpk dmpk coding downstream 43730 25179724 ~ 25203682 (+)
vasp LOC108423768,LOC107575450 coding downstream 80136 25216130 ~ 25235822 (+)
LOC103040246 LOC108444483 coding downstream 152613 25288607 ~ 25292893 (+)
proser1 proser1,LOC107556855 coding downstream 187354 25323348 ~ 25336596 (+)
G178981 NA non-coding upstream 89 25134240 ~ 25135395 (+)
LOC111195079 NA non-coding upstream 105810 25024143 ~ 25029674 (+)
G178938 NA non-coding upstream 112222 25023040 ~ 25023262 (+)
G178928 NA non-coding upstream 172960 24961298 ~ 24962524 (+)
G178896 NA non-coding upstream 318171 24795483 ~ 24817313 (+)
G178987 NA non-coding downstream 756 25136750 ~ 25137219 (+)
G178998 NA non-coding downstream 31346 25167340 ~ 25168133 (+)
G179014 NA non-coding downstream 116530 25252524 ~ 25253549 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 121799 25257793 ~ 25259641 (+)
G179007 NA non-coding downstream 124520 25260514 ~ 25317303 (+)
LOC103032894 LOC108424565 other upstream 680862 24447792 ~ 24454622 (+)
G178485 NA other upstream 2170495 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2425927 22689001 ~ 22709557 (+)
G178352 NA other upstream 2589354 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2633325 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 108167 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 1694643 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1777756 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2388308 27524302 ~ 27525441 (+)
G180235 erg other downstream 6003350 31139344 ~ 31151095 (+)

Expression


Co-expression Network