G178987


Basic Information

Item Value
gene id G178987
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25136750 ~ 25137219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242527
CGCATCTGGATTTTAACCTTAACCATCTatggcaggggtcggcaattaagtttggccgcgggccagattttttccaagccattacatggcgggcCACAAGCACTTGGGCGCGGTGGCGGGAGGgcgctcttaaaatgacaagcagacattcaagtgggctgatgtgggtgaaatctgtggactgaccattgggggcgctattaatgatatacctgtttgttaaattaaaaaaaaaaaacgaatataaaaaaaaaaaacagaataaagaagctagcagttatctaacagcccgtggctctatcaaaaaatctttaataaaattttctgttttggaaaattaagtttctaaataaagagcatttttgagacggacagtccgattttttttttcattatagttcaacctcacgggccagatgtttcttgcttgcgggccgcatctggcccgcgggccgcctattgccgaccta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242527 True 470 lncRNA 0.43 1 25136750 25137219

Neighbor

gene id symbol gene type direction distance location
hint1 hint1,LOC107665476 coding upstream 2595 25131225 ~ 25134155 (+)
chsy3 chsy3 coding upstream 9627 25055847 ~ 25127123 (+)
isoc1 isoc1 coding upstream 93830 25030961 ~ 25042920 (+)
LOC103037195 slc27a6,LOC108277201 coding upstream 120052 24983783 ~ 25016698 (+)
slc12a2 slc12a2,LOC107680742 coding upstream 320262 24762407 ~ 24816488 (+)
dact3 NA coding downstream 674 25137893 ~ 25158281 (+)
dmpk dmpk coding downstream 42505 25179724 ~ 25203682 (+)
vasp LOC108423768,LOC107575450 coding downstream 78911 25216130 ~ 25235822 (+)
LOC103040246 LOC108444483 coding downstream 151388 25288607 ~ 25292893 (+)
proser1 proser1,LOC107556855 coding downstream 186129 25323348 ~ 25336596 (+)
G178985 NA non-coding upstream 756 25135484 ~ 25135994 (+)
G178981 NA non-coding upstream 1355 25134240 ~ 25135395 (+)
LOC111195079 NA non-coding upstream 107076 25024143 ~ 25029674 (+)
G178938 NA non-coding upstream 113488 25023040 ~ 25023262 (+)
G178928 NA non-coding upstream 174226 24961298 ~ 24962524 (+)
G178998 NA non-coding downstream 30121 25167340 ~ 25168133 (+)
G179014 NA non-coding downstream 115305 25252524 ~ 25253549 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 120574 25257793 ~ 25259641 (+)
G179007 NA non-coding downstream 123295 25260514 ~ 25317303 (+)
G179028 NA non-coding downstream 227088 25364307 ~ 25367336 (+)
LOC103032894 LOC108424565 other upstream 682128 24447792 ~ 24454622 (+)
G178485 NA other upstream 2171761 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2427193 22689001 ~ 22709557 (+)
G178352 NA other upstream 2590620 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2634591 22493440 ~ 22502159 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other downstream 106942 25244161 ~ 25257469 (+)
LOC103024073 LOC108424537 other downstream 1693418 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1776531 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2387083 27524302 ~ 27525441 (+)
G180235 erg other downstream 6002125 31139344 ~ 31151095 (+)

Expression


Co-expression Network