LOC111195080 (tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006)


Basic Information

Item Value
gene id LOC111195080
gene name tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25257793 ~ 25259641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242552
ttgtgcAGGTGTGGGAAAGGGCAATGGCAGTGATCTGAAGGTGCGGATCATAGTGAAAAGAGAGCAGGTGTTCCAGTGTGTCTGTGCCACGCAGACGAACTGTAGGCTGTTCCCAGATACTGAAAACAATGCCGTGGTGATCAGCTTTCAGGAAGGGCCAGTGGTTTGTGGTGATGTTAAGGTCATGTTTGAATCCAGGGCTGGTCTTCCAAAGGGGTATGAGGACTATCCTTTCTATTTCTGGTTCAACACTTCATTTGTAGAGAACAACAGGTGAGGTTTTTGCTGTCCATTGTCCTCAGAAGCAGACACTGGCTTTGTttacctaccagaccactctggttttagattttatatataaaaatgccaGGCCacttaattcattaattagaatattttgatattttgtcccCTCTCAGTTTAGTAAACATTACTGCTTTCAATGTAAAAGGAAAAAtcata
>XR_002651479.1
ctAGTGAAAACATTTTGgtgtaacaaaaatataatttaaagatGAATATTGAAGACAAATTGGTAAGTTCGGACAAAAGCTGAATTGTTGACCTTTTGTCTcctattcatcttttaatgtcaaacccaattTGTTTTCAGTCtaaagcagaaataaagaaatgagaCTGACTTATCAAGTACTTTTGGGGGGCAGTGTATGTTTAGGGGCTGTTTCCTGTGTAGTTCCAATTAAAATCTGCAGTCAGTCTGCTCCTTTCAGAGTGACTGCACTGTTATGTGTATTGGTTATGTAATTTAATGCTCCTGGGCAttgctgtgtttgttgtgcAGGTGTGGGAAAGGGCAATGGCAGTGATCTGAAGGTGCGGATCATAGTGAAAAGAGAGCAGGTGTTCCAGTGTGTCTGTGCCACGCAGACGAACTGTAGGCTGTTCCCAGATACTGAAAACAATGCCGTGGTGATCAGCTTTCAGGAAGGGCCAGTGGTTTGTGGTGATGTTAAGGTCATGTTTGAATCCAGGGCTGGTCTTCCAAAGGGGTATGAGGACTATCCTTTCTATTTCTGGTTCAACACTTCATTTGTAGAGAACAACAGGTGAGGTTTTTGCTGTCCATTGTCCTCAGAAGCAGACACTGGCTTTGTttacctaccagaccactctggttttagattttatatataaaaatgccaGGCCacttaattcattaattagaatattttgatattttgtcccCTCTCAGTTTAGTAAA

Function

symbol description
tpte2 Predicted to enable phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity and protein tyrosine phosphatase activity. Predicted to be involved in several processes, including dephosphorylation; phosphatidylinositol 3-kinase signaling; and regulation of protein kinase B signaling. Located in endoplasmic reticulum membrane.

NR:

description
PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2-like isoform X1

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0016314 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242552 False 462 lncRNA 0.42 3 25258117 25259641
XR_002651479.1 True 752 lncRNA 0.40 3 25257793 25259607

Neighbor

gene id symbol gene type direction distance location
vasp LOC108423768,LOC107575450 coding upstream 21971 25216130 ~ 25235822 (+)
dmpk dmpk coding upstream 54111 25179724 ~ 25203682 (+)
dact3 NA coding upstream 99512 25137893 ~ 25158281 (+)
hint1 hint1,LOC107665476 coding upstream 123638 25131225 ~ 25134155 (+)
chsy3 chsy3 coding upstream 130670 25055847 ~ 25127123 (+)
LOC103040246 LOC108444483 coding downstream 28966 25288607 ~ 25292893 (+)
proser1 proser1,LOC107556855 coding downstream 63707 25323348 ~ 25336596 (+)
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding downstream 79947 25339588 ~ 25358610 (+)
LOC103025709 NA coding downstream 266902 25526543 ~ 25550096 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding downstream 297423 25557064 ~ 25586563 (+)
G179014 NA non-coding upstream 4244 25252524 ~ 25253549 (+)
G178998 NA non-coding upstream 89660 25167340 ~ 25168133 (+)
G178987 NA non-coding upstream 120574 25136750 ~ 25137219 (+)
G178985 NA non-coding upstream 121799 25135484 ~ 25135994 (+)
G178981 NA non-coding upstream 122398 25134240 ~ 25135395 (+)
G179007 NA non-coding downstream 873 25260514 ~ 25317303 (+)
G179028 NA non-coding downstream 104666 25364307 ~ 25367336 (+)
G179034 NA non-coding downstream 199966 25459607 ~ 25481191 (+)
G179173 NA non-coding downstream 512022 25771663 ~ 25771948 (+)
G179177 NA non-coding downstream 619002 25878643 ~ 25878855 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 324 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 803171 24447792 ~ 24454622 (+)
G178485 NA other upstream 2292804 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2548236 22689001 ~ 22709557 (+)
G178352 NA other upstream 2711663 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 1570996 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1654109 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2264661 27524302 ~ 27525441 (+)
G180235 erg other downstream 5879703 31139344 ~ 31151095 (+)
G180266 NA other downstream 6173557 31433198 ~ 31433909 (+)

Expression


Co-expression Network