smpd1 (smpd1,LOC107718723,LOC107720657,LOC107556869)


Basic Information

Item Value
gene id smpd1
gene name smpd1,LOC107718723,LOC107720657,LOC107556869
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25244161 ~ 25257469 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242561
tgctgctgctgagctctgtgttgttgttgttgttgtggatGAGGGGCTACAGGGTACAGGGGGACCGCAGGCAGCAGTTCTCTGTGTTCTCTAGCTtctcagtgagtcagtgagtttAGACACCCCGCTGTGGGCTGTGTCTCGGCGGCGCTGTGGGGGCGGGAGGTGTGAGTTGGTGGTCAGTGAGCTGTTCCTGTCTGTAGTCTGTAGTGTAGCAGCGCGGCGCAGGGTCGGGGTTAAACACAGCGGGCTGTGTGTGGGACAGAAGCTCAGGCTCGGTAGGAAACCTgcgtgtgtttatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>TU242563
CCTCCCCCGTCTCTCGGCGGTCACGTGCTGCCTCAGCTGACTGGACCGGTTCATAaccgaggctgctgctgctgagctctgtgttgttgttgttgttgtggatGAGGGGCTACAGGGTACAGGGGGACCGCAGGCAGCAGTTCTCTGTGTTCTCTAGCTtctcagtgagtcagtgagtttAGACACCCCGCTGTGGGCTGTGTCTCGGCGGCGCTGTGGGGGCGGGAGGTGTGAGTTGGTGGTCAGTGAGCTGTTCCTGTCTGTAGTCTGTAGTGTAGCAGCGCGGCGCAGGGTCGGGGTTAAACACAGCGGGCTGTGTGTGGGACAGAAGCTCAGGCTCGGTAGGAAACCTgcgtgtgtttatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
>XM_022680723.1
atGAGGGGCTACAGGGTACAGGGGGACCGCAGGCAGCAGTTCTCTGTGTTCTCTAGCTtctcaAGCGACACAAACACTGAGCACGTTGCTCATGCAGTTGGAGAAGCCTGCATTCGTTTACACCTTGCTGAGGAGAAAGTGTGTCGAGACATAACAGAGCTCTTCCGTGATGACTTCATCCGTGCCCTCCAGGAGTCGTTTCTTTGGCCCACAGAGGCCTGTGCTTTACTGTTGGGACCTGACTGTGGCCACTTCGACATTTACGCCTCCTGGAACATCACCCTGCCCAAGGTTCCTAAGCCTCCAGTGGTTCCCCCAACACCACCCAAGCCTGGGTCACCCCAAAGCCGAGTGCTCTTCCTCACTGACATCCACTGGGATGCTCAGTACGCAGAGGGCAGTGCCATTAAATGTAAAGAACCTCTGTGCTGCAGGAACGAGTCTGGCACACCTACCTGGAGGCATCCTGGGGCAGGATACTGGGGCACCTACAGTAATTGTGACCTCCCTCTGCGTACTGTAGAAAACCTACTGCAGAATGTGGCCAAAGCAGGACCCTGGGACTGGGTCTACTGGACTGGAGACATTCCTGCCCACAATGTGTGGTCCCAAACAAGGGCTCAGCAGCTGAATGAGCTGACTATCATCTCTAAGCTTGTCAAGAAGTATCTAGGACCCAAAGTTACTGTGTATCCAGCTGTTGGAAACCATGAGAGCACACCAGTTAACAGCTTCCCTCCTCCATTTGTACAAGGAAACCGCTCTTCTCAGTGGCTGTATGACACAATGGCGGAGGAGTGGGCAACCTGGTTGCCAGCTGAAGCTCTGGAGACTTTGCGGTATCGACCCCCTCGCACACTCCTGGCGGAGTGGAGTGTggccctGTTTAactgttgtgtttgttttggttgttttctctttttctccaggTATGAAAGCACGATAACTGGTCAGTTTTTTGGACACACGCATGTTGATCaatttcagatgttttatgatcAGGAGACAATGACTCGTCCTGTGGGTGTGGCTTACATTGCCCCAAGTGTTACTACATACATTAACTTAAACCCAGGTTACCGGGTGTACTATGTTGATGGTAACTATCCTGGCAGCAGTCGAATTGTCTTGGACTACGACACCTTTATTCTCAACCTCACTTTAGCCAACGGTTATGCAGATGGTCAAGATGGTCTCGCCAAGCCTCAACCAGACCCGGTCTGGTCACTACTGTATCGGGCTTCTACAGCCTACGACATGCCCATTCTGTTTCCCTCCAACTGGGATGCTCTGATCAAAAACTTTCTCACTGATGATCGTGTCTTCCAAAAATTTTGGTACTTGATGCACAAAGGCCATGTGTCGGAGCCCTGCAAGGACACATGCAAAACCTCGCTGATCTGCTTTCTCCGCAGTGGTCGCTACGACCTGCTGCAGCAGTGTGATCTACTGAACCGTGGCAAAGGACAAATGACACGTTCTGTTAGGAAGACCCTGTGCTGATTGGTTGAGCTGGGCTCTGCTGGATTAAAGCAGTCTTTTGCTAGTATGAAAGAGACAATCGGTCacaggtgattttttttcaaaactacaCGTCACATTTTTCTGAGTGTTCAttagaaagaagagaaaattagTGAGTCATTATTCAAATTATATCGAAAATGTGTAGCATTTTTGTGTCTTTTGGATACTTGCACTGTAATACCAAAAGAAGTGTAATCTTTGGATAATATTGTATGTTTGcctaattacagtatattgccaaaagtatttgctcatCCATCCAAATAATTGAACTCATATTTAAATGACTTTCtttggccacaggtgtataaaaacaCGCACCTCTGCATGCAGCCTGCTTctgtaaaaataagagaaagaaaaagtgaattCCGGCATAGTACCGTGATCCAAGTTTTCTCACTACAatatattccacagtcaactgtcagtgatattataacaaacaAAGTAGAATTGGAAGTGATTGGGAATAACAGCAATTCAGCCATGTAGTGGTAGACCACATAACTTAACAGAGCAGGCCAGCGGATGCAGAGTTATATAATGCACAGTGATCACTAACTTTCTACAGAGTCGATTACTACTGACCTCCAAACTTAATGTGGCCTTCAGatcagctcaagaacagtagagcctAGAGAGTTTAATATAATGGGTTTCAATGACTGAGCAACTCCAACCAAACTCTCATCACCATCCACAAGGGTGGTGAGCATCTGCTATCTAcctttggcaatatagtgtacatttaatgcttgccattaataatagtaataattgaGTTAAAATGCCAACGTGCATTGTGTTAACAAAACCTCAGGGTGTTcattgtaataaattaaatcaagtAATTCTAATCATCAcctacattatattatataggcATAAGGATAATACATACAACAATGGGAAAAGGGTACTGAAAGCACACTTTTAAAGGCAAAGTATACATTTCGCCTCACTTGAAAAAGAATGAAATTGCACCTTAAGAAACACTGGGGGATGTTATTTAAAGGTTATACTAAATAATCTGTCCTTTCTCTCACATTCGAGGTGCCTATACAGAAAGTACCATTGGTTTCCTAACAGAGTGGAGTGATATGGTTTGGACTTTctttctggatgt

Function

symbol description
smpd1 Predicted to enable acid sphingomyelin phosphodiesterase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin catabolic process. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in Niemann-Pick disease; Niemann-Pick disease type A; and Niemann-Pick disease type B. Orthologous to human SMPD1 (sphingomyelin phosphodiesterase 1).

NR:

description
sphingomyelin phosphodiesterase

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K12350 SMPD1, ASM; sphingomyelin phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
TU242561 False 349 lncRNA 0.50 1 25244224 25244572
TU242563 False 412 lncRNA 0.53 1 25244161 25244572
XM_022680723.1 True 2656 mRNA 0.44 5 25244262 25257469

Neighbor

gene id symbol gene type direction distance location
vasp LOC108423768,LOC107575450 coding upstream 8339 25216130 ~ 25235822 (+)
dmpk dmpk coding upstream 40479 25179724 ~ 25203682 (+)
dact3 NA coding upstream 85880 25137893 ~ 25158281 (+)
hint1 hint1,LOC107665476 coding upstream 110006 25131225 ~ 25134155 (+)
chsy3 chsy3 coding upstream 117038 25055847 ~ 25127123 (+)
LOC103040246 LOC108444483 coding downstream 31138 25288607 ~ 25292893 (+)
proser1 proser1,LOC107556855 coding downstream 65879 25323348 ~ 25336596 (+)
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding downstream 82119 25339588 ~ 25358610 (+)
LOC103025709 NA coding downstream 269074 25526543 ~ 25550096 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding downstream 299595 25557064 ~ 25586563 (+)
G178998 NA non-coding upstream 76028 25167340 ~ 25168133 (+)
G178987 NA non-coding upstream 106942 25136750 ~ 25137219 (+)
G178985 NA non-coding upstream 108167 25135484 ~ 25135994 (+)
G178981 NA non-coding upstream 108766 25134240 ~ 25135395 (+)
LOC111195079 NA non-coding upstream 214487 25024143 ~ 25029674 (+)
LOC111195080 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 324 25257793 ~ 25259641 (+)
G179007 NA non-coding downstream 3045 25260514 ~ 25317303 (+)
G179028 NA non-coding downstream 106838 25364307 ~ 25367336 (+)
G179034 NA non-coding downstream 202138 25459607 ~ 25481191 (+)
G179173 NA non-coding downstream 514194 25771663 ~ 25771948 (+)
LOC103032894 LOC108424565 other upstream 789539 24447792 ~ 24454622 (+)
G178485 NA other upstream 2279172 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 2534604 22689001 ~ 22709557 (+)
G178352 NA other upstream 2698031 22544640 ~ 22546130 (+)
LOC103022948 hnrnpd,LOC108440733,LOC108276832,LOC107702593 other upstream 2742002 22493440 ~ 22502159 (+)
LOC103024073 LOC108424537 other downstream 1573168 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 1656281 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2266833 27524302 ~ 27525441 (+)
G180235 erg other downstream 5881875 31139344 ~ 31151095 (+)
G180266 NA other downstream 6175729 31433198 ~ 31433909 (+)

Expression


Co-expression Network