G179067


Basic Information

Item Value
gene id G179067
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25244191 ~ 25244617 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242664
ttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttgataaacacacgcAGGTTTCCTACCGAGCCTGAGCTTCTGTCCCACACACAGCCCGCTGTGTTTAACCCCGACCCTGCGCCGCGCTGCTACACTACAGACTACAGACAGGAACAGCTCACTGACCACCAACTCACACCTCCCGCCCCCACAGCGCCGCCGAGACACAGCCCACAGCGGGGTGTCTaaactcactgactcactgagaAGCTAGAGAACACAGAGAACTGCTGCCTGCGGTCCCCCTGTACCCTGTAGCCCCTCatccacaacaacaacaacaacacagagctcagcagcagcagcctcggtTATGAACCGGTCCAGTCAGCTGAGG

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU242664 True 427 lncRNA 0.46 1 25244191 25244617

Neighbor

gene id symbol gene type direction distance location
LOC103039311 LOC103039311 coding downstream 65744 25170423 ~ 25178447 (-)
kiaa1024l NA coding downstream 192059 25046214 ~ 25052132 (-)
LOC103037512 LOC103037512,LOC108423775 coding downstream 264102 24962626 ~ 24980089 (-)
c20h5orf63 NA coding downstream 654528 24587260 ~ 24589663 (-)
march3 march3 coding downstream 657786 24547003 ~ 24586405 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding upstream 59831 25304448 ~ 25321697 (-)
LOC103043328 LOC108444414 coding upstream 114615 25359232 ~ 25363323 (-)
LOC103044157 slc7a1,LOC103044157,LOC108410642,LOC107592154,LOC107720662,LOC107685000,LOC108277031 coding upstream 235571 25480188 ~ 25506865 (-)
LOC103044637 paxbp1,LOC107592156 coding upstream 264105 25508722 ~ 25522398 (-)
ltn1 ltn1 coding upstream 1508275 26752892 ~ 26782177 (-)
G178999 NA non-coding downstream 76054 25167341 ~ 25168137 (-)
G178986 NA non-coding downstream 108175 25135452 ~ 25136016 (-)
G178963 NA non-coding downstream 221300 25022639 ~ 25022891 (-)
G178962 NA non-coding downstream 224028 25013702 ~ 25020163 (-)
G178954 NA non-coding downstream 281661 24961165 ~ 24962530 (-)
G179069 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 13160 25257777 ~ 25259641 (-)
G179057 tpte,tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding upstream 15902 25260519 ~ 25317264 (-)
G179075 LOC108444483 non-coding upstream 44498 25289115 ~ 25290939 (-)
G179085 stoml3b,LOC103043838,LOC108444492,LOC103140675,LOC103475509,LOC102232466,LOC101162729,LOC102781741,LOC107087919,LOC104923823 non-coding upstream 94180 25338797 ~ 25358939 (-)
G179106 NA non-coding upstream 222583 25467200 ~ 25467583 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 36805 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 110035 25130982 ~ 25134156 (-)
sh2d4a sh2d4a other downstream 2286965 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 2302527 22935490 ~ 22941664 (-)
G178450 NA other downstream 2571508 22672132 ~ 22672683 (-)
thsd1 thsd1 other upstream 49058 25293675 ~ 25303083 (-)
LOC103043022 LOC108410630,LOC107556853 other upstream 119315 25363932 ~ 25472244 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 411638 25656255 ~ 25864474 (-)
G179569 NA other upstream 2195614 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 2225469 27470086 ~ 27477978 (-)

Expression


Co-expression Network