G179106


Basic Information

Item Value
gene id G179106
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25467200 ~ 25467583 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242736
CTCATTGGCCAGTGTTTGTCTGCATATCACAGGAATTCTATCAGTATTGGCAGACACTATAATAAATCATAGAATCAGACAgatttaagtttagatttaaattcaattttagTGTATTTACTGAACTCCAGAACAGAAGAAAGTGTAGATGACATGgtgctaaataaaaaatatcagatttcaGTACTAAAAATTTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242736 True 200 lncRNA 0.30 2 25467200 25467583

Neighbor

gene id symbol gene type direction distance location
LOC103043328 LOC108444414 coding downstream 103877 25359232 ~ 25363323 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding downstream 145503 25304448 ~ 25321697 (-)
LOC103039311 LOC103039311 coding downstream 288753 25170423 ~ 25178447 (-)
kiaa1024l NA coding downstream 415068 25046214 ~ 25052132 (-)
LOC103037512 LOC103037512,LOC108423775 coding downstream 487111 24962626 ~ 24980089 (-)
LOC103044157 slc7a1,LOC103044157,LOC108410642,LOC107592154,LOC107720662,LOC107685000,LOC108277031 coding upstream 12605 25480188 ~ 25506865 (-)
LOC103044637 paxbp1,LOC107592156 coding upstream 41139 25508722 ~ 25522398 (-)
ltn1 ltn1 coding upstream 1285309 26752892 ~ 26782177 (-)
LOC103046333 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 coding upstream 1326811 26794394 ~ 26799253 (-)
LOC103031551 NA coding upstream 1343447 26811030 ~ 26815128 (-)
G179085 stoml3b,LOC103043838,LOC108444492,LOC103140675,LOC103475509,LOC102232466,LOC101162729,LOC102781741,LOC107087919,LOC104923823 non-coding downstream 108261 25338797 ~ 25358939 (-)
G179057 tpte,tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 149936 25260519 ~ 25317264 (-)
G179075 LOC108444483 non-coding downstream 176261 25289115 ~ 25290939 (-)
G179069 tpte2,LOC108410538,LOC108276937,LOC107718790,LOC107701101,LOC107685006 non-coding downstream 207559 25257777 ~ 25259641 (-)
G179067 NA non-coding downstream 222583 25244191 ~ 25244617 (-)
G179129 NA non-coding upstream 39963 25507546 ~ 25508333 (-)
G179126 NA non-coding upstream 116873 25584456 ~ 25671080 (-)
G179178 NA non-coding upstream 411066 25878649 ~ 25878946 (-)
G179193 NA non-coding upstream 587661 26055244 ~ 26056126 (-)
G179288 NA non-coding upstream 667950 26135533 ~ 26188341 (-)
thsd1 thsd1 other downstream 164117 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 259814 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 333044 25130982 ~ 25134156 (-)
sh2d4a sh2d4a other downstream 2509974 22945161 ~ 22957226 (-)
LOC111195067 NA other downstream 2525536 22935490 ~ 22941664 (-)
LOC103047293 LOC108410718,LOC106581537 other upstream 188672 25656255 ~ 25864474 (-)
G179569 NA other upstream 1972648 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 2002503 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 2055548 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2056745 27524328 ~ 27525388 (-)

Expression


Co-expression Network