G179183


Basic Information

Item Value
gene id G179183
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 25964643 ~ 25968792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242842
attataattactgcacgactaggataaggtagctttgggcaacagacaacacaaagatggtaagtaagggagaggccacacccaatatgcaaatatatggttttcagttttgcttctcacaaaaagaaagaattacaAAAACGTTGTACATTTTACTTTGGCATTTAGACtgaaatttacaaatgtatttgacAACAAACAATTACAAAGAAACACCCAGTAGTGCATataattagtgtgattgcagtaatgcaatcacagtattgatcttcttaagtcttattcttcttcttcttcttcttcttcttcttattattattattattattattccacctgttttttgtcCGGTTAACTAGTGCCGCAGTTTTCGAAATATCGACTTCgttcaaaagagaaaacgtGCGTCCTTATCGGGAATGGtgggcttgtatacagctttccgatcggacttacgtttttcgtaaaaacttcgtaagtACGCGTTTTTTTgaccattgaaaatgaatgggcagAACTTTGCACGCCCGTGGACGTCGCaatttttgaaatactaagATGAAACCAATTGAGGacctgtagaacttattgagctCTTTCCGAAAATATGCGTTACGAAAAGTTACGACGTACGGATTTCGTACGAATGTCGTACGAAGTGGCCCCATTGGAATGAATGGGGCCAATCGGAGGCGGCAGCTAAGATCGAAGGACAGGTAGCTAgaactccagtactgtgtgtaatggagcagCTATGGGATAAATCAGCGttaggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccatgggtcaaaagtttggacaccccggccccccagtactgtgtgtaatggagccacgggtcaaaagtttggacacccccgaACGGCCAGAGCAACCTAGCGTGCATAGCTGATTGATGTATTTGCACGTTGCGTAGCAACGTGCAAACACcatttaatctaatttatgCATATaaatcacctagcaaccacctagcaacacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccgcatagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacatcctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaactgcctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacacctagcaaccacctagcaaccaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaactgcctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagatACCAGCCAGCtctgcaatcacactcgcagtttctgtaggaactgcaatctagttat
>TU242847
aaacaccatagcatccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccgcatagcaaccacttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaactgcctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccacctagcaacaccttagcaaccacctagcaaccacttagcaacaccttagcaaccaccctggatacgatagcaacaccttagcaaccacttagcaacaccttagcaacaccatagcagatACCAGCCAGCtctgcaatcacactcgcagtttctgtaggaactgcaatctagttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242842 True 1782 lncRNA 0.46 4 25965763 25968792
TU242847 False 593 lncRNA 0.51 4 25964643 25968792

Neighbor

gene id symbol gene type direction distance location
LOC103045760 LOC108410697 coding upstream 321327 25625356 ~ 25643316 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding upstream 347419 25589823 ~ 25617224 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding upstream 378080 25557064 ~ 25586563 (+)
LOC103025709 NA coding upstream 414547 25526543 ~ 25550096 (+)
LOC103043838 stoml3b,LOC103043838,LOC108444492,LOC107556874,LOC108277281,LOC102781741,LOC107685018,LOC107720596,LOC101474847 coding upstream 606033 25339588 ~ 25358610 (+)
LOC103021428 LOC108410728,LOC108277327 coding downstream 113003 26081795 ~ 26691002 (+)
nle1 nle1,LOC107720672,LOC107708614 coding downstream 814256 26783048 ~ 26793500 (+)
LOC103025645 LOC108424540 coding downstream 911857 26880649 ~ 26896187 (+)
LOC103026363 LOC108424538 coding downstream 928678 26897470 ~ 26902329 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding downstream 934047 26902839 ~ 26909223 (+)
G179177 NA non-coding upstream 85788 25878643 ~ 25878855 (+)
G179173 NA non-coding upstream 192695 25771663 ~ 25771948 (+)
G179034 NA non-coding upstream 483452 25459607 ~ 25481191 (+)
G179028 NA non-coding upstream 597307 25364307 ~ 25367336 (+)
G179007 NA non-coding upstream 647340 25260514 ~ 25317303 (+)
G179239 NA non-coding downstream 432216 26401008 ~ 26401267 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding downstream 825611 26794403 ~ 26799202 (+)
G179335 NA non-coding downstream 883903 26852695 ~ 26852983 (+)
G179345 NA non-coding downstream 915624 26884416 ~ 26889099 (+)
G179390 NA non-coding downstream 1086157 27054949 ~ 27055164 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 707174 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 1510021 24447792 ~ 24454622 (+)
G178485 NA other upstream 2999654 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 3255086 22689001 ~ 22709557 (+)
G178352 NA other upstream 3418513 22544640 ~ 22546130 (+)
LOC103024073 LOC108424537 other downstream 861845 26830637 ~ 26879083 (+)
rnasek rnasek,LOC107554319 other downstream 944958 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1555510 27524302 ~ 27525441 (+)
G180235 erg other downstream 5170552 31139344 ~ 31151095 (+)
G180266 NA other downstream 5464406 31433198 ~ 31433909 (+)

Expression


Co-expression Network