G179306


Basic Information

Item Value
gene id G179306
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26592235 ~ 26696576 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU242988
ccaattttctatttttgcatttagcctcaaacggtcagaaaattaatttaataaatgttacactgacctaGCCACAGTAGCTAAATAGCATTTCCATATCATTCTAATCACatcatttaaatactgtatcatCTACAGATGCATCTTGGGAAAtgtgtcttcttttctgtgtttttccctgTTTAAAGTACGGGAACACTACAGCGAATGTGGAGGGCGTGGCAGAGTGAAATATCTGAgcgttcagtaaaaaaaaaaaacaacaaccaagATTTTACCTCATATGCTAAAAGCTAACTGTGCATCTGTCCAACAGGCCCAACAACAGATTACGCTCGAACCCTGGGATATTTCACTGATTTTTGATCGCCGTGGTCCATCCACATTATCTGCAAGGACCTCGACTGTCCTCAAAGACCTCGAAAAGAAAAACCGTGTCTGTACAATGGTCTGTAGGCctacacagaaaacacagctaAAATTGTAGCCCTGATAACGTGGCAAACGACGCGAGACAAAAGTGTTCGGTTTGTGACCGATCCATCCGTGTTTAAACCCAAACTAATGTCAGAAAACGACAAAAACGACAGGCCTGAAAATCCGCAGCTGACAGGAGATATCACAAGTCGCTCTTGTTTCTGCAGCCCTGCCTGCACTCGAGAGCACAATGTCATCATGCTCAGTAACGAagaagaattaaaaaaacaaaacaaacccagcacccaaagaaagaaagaaataaaagggTATTAAAACACAggctgaaaaaaatgaacattaaaaaataaaattgtatatacGGCATTCAGTGTATAAAAGAGATCCAGcacaaagtgagagagtgagaaacggagaaagagcgagataaaaagagagaaagacaaagagagagagagagagagagactattgTACATTGGCATGTCGAGAAaagtggagagaaagagaacgcCAAGGAGCCAAGTCCAGAGAAGGTGCTGCATCAAAACAACATTAACCTCCCACGGCAAACACAAAGGCAACCATGGTGATTAAGAGAAGCTGATTTATGTCTTTACGTCTTTGTTACGAAAATGTACGTTGTTACGAAGTGTCCTTGTCGTAGTCAGAGTGGGAAAAAAACGGGCATTGTACTACTACACTGGCGTGTTTTCAGTATCACCACTGGTTGTCCTGGTCTAACTGAGAAGAAAGTGGAccataaagagaaaaagagcttTCTTCAGGTTCACAGTCTTGAATAGCTAAGGATCCAAAAGAGTTCTCTGGAGAAGAACCAGCACTGGTTCCTTAAAGAACCCTCTGCCACTTCTggcaaaaaaaaaaaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU242988 True 1333 lncRNA 0.41 2 26592235 26696576

Neighbor

gene id symbol gene type direction distance location
LOC103044637 paxbp1,LOC107592156 coding downstream 1069837 25508722 ~ 25522398 (-)
LOC103044157 slc7a1,LOC103044157,LOC108410642,LOC107592154,LOC107720662,LOC107685000,LOC108277031 coding downstream 1085370 25480188 ~ 25506865 (-)
LOC103043328 LOC108444414 coding downstream 1228912 25359232 ~ 25363323 (-)
vps36 vps36,LOC107720661,LOC107685004,LOC107701118 coding downstream 1270538 25304448 ~ 25321697 (-)
LOC103039311 LOC103039311 coding downstream 1413788 25170423 ~ 25178447 (-)
ltn1 ltn1 coding upstream 56316 26752892 ~ 26782177 (-)
LOC103046333 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 coding upstream 97818 26794394 ~ 26799253 (-)
LOC103031551 NA coding upstream 114454 26811030 ~ 26815128 (-)
LOC103023750 LOC108424450 coding upstream 126163 26822739 ~ 26825856 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding upstream 212635 26909211 ~ 26912823 (-)
G179304 NA non-coding downstream 24165 26567644 ~ 26568070 (-)
G179297 NA non-coding downstream 233875 26357983 ~ 26358360 (-)
G179288 NA non-coding downstream 403894 26135533 ~ 26188341 (-)
G179193 NA non-coding downstream 536109 26055244 ~ 26056126 (-)
G179178 NA non-coding downstream 713289 25878649 ~ 25878946 (-)
G179475 NA non-coding upstream 176002 26872578 ~ 26874563 (-)
G179487 LOC108424537 non-coding upstream 181000 26877576 ~ 26879423 (-)
G179490 NA non-coding upstream 187870 26884446 ~ 26889085 (-)
G179524 NA non-coding upstream 313948 27010524 ~ 27010818 (-)
G179528 NA non-coding upstream 319169 27015745 ~ 27015966 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 727761 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1119991 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 1289152 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 1384849 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 1458079 25130982 ~ 25134156 (-)
G179569 NA other upstream 743655 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 773510 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 826555 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 827752 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 865269 27561845 ~ 27566692 (-)

Expression


Co-expression Network