G179345


Basic Information

Item Value
gene id G179345
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26884416 ~ 26889099 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243037
acatttttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaattacaaaaacctgcaaaaacaaaacaaaatacattacagtaggtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctctctccatcaccttcctggccatccatccgctgcagtctgtttggccataaattctcatcaacattgcatctgatatgttctttagcaatgcactgtgggaagaatgcctgagccatcctctacactgatcgccacaggactatataatcattatatcatCACAGGACTATATCATCGTTATATAATCACAGGACTAGCATCAAAGAACTAGCACCAGGCCAAGATGTATACAGTGGATAgaaaaagtctacacacccctgttcaaatggtaggtttttgtgatgtaaaaaaaattacaatacagtttttctcattggtttggctcatttcttgaaactgagatgacattcctataactaaaaggtaaattggccaaacagacttacagttcttcacaacacttcagataaccagcaaaatgtcatatgtctcccaaaacgttcattcttgcttcaaaatgaagtctttctcccatataaatagtcagtaccataaaaatggcatagatccttctcaattgcttcggcacattttcattaattttgtccatctgtcaaaataaactggacggtgcagcaaaactacatggatcctcatcactgctcatatcgctccaaaaacagtttacccacgtgtcaaaactgatttcctttctcacacaaatcatcagtgcccccaaaatgcattgtccctttggcattgtgtaagtactgcaagtcaaaatgcttagatgttttgtcttta
>TU243038
acatttttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaattacaaaaacctgcaaaaacaaaacaaaatacattacagtaggtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctctctccatcaccttcctggccatccatccgctgcagtctgtttggccataaattctcatcaacattgcatctgatatgttctttagcaatgcactgtgggaagaatgcctgagccatcctctacactgatcgccacaggactatataatcattatatcatCACAGGACTATATCATCGTTATATAATCACAGGACTAGCATCAAAGAACTAGCACCAGGCCAAGATGTATACAGTGGATAgaaaaagtctacacacccctgttcaaatggtaggtttttgtgatgtaaaaaaattacaataagacaaataatttctacctataatgtgacctataacctgtacaatgcaattgaaaaacaaacagaaatctttcagggaggtgaagtaaaaataaacaactgagatATTGAGGTTGCATAAGTGTGCACACCCTTTTATAACTAGggg
>TU243039
acatttttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaattacaaaaacctgcaaaaacaaaacaaaatacattacagtaggtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctctctccatcaccttcctggccatccatccgctgcagtctgtttggccataaattctcatcaacattgcatctgatatgttctttagcaatgcactgtgggaagaatgcctgagccatcctctacactgatcgccacaggactatataatcattatatcatCACAGGACTATATCATCGTTATATAATCACAGGACTAGCATCAAAGAACTAGCACCAGGCCAAGATGTATACAGTGGATAgaaaaagtctacacacccctgttcaaatggtaggtttttgtgatgtaaaaaaaattacaatacagtttttctcattggtttggctcatttcttgaaactgagatgacattcctataactaaaaggtaaattggccaaacagacttacagttcttcacaacacttcagataaccagcaaaatgtcatatgtctcccaaaacgttcattcttgcttcaaaatgaagtctttctcccatataaatagtcagtaccataaaaatggcatagatccttctcaattgcttcggcacattttcattaattttgtccatctgtcaaaataaactggacggtgcagcaaaactacatggatcctcatcactgctcatatcgctccaaaaacagtttacccacgtgtcaaaactgatttcctttctcacacaaatcatcagtgcccccaaaatgcattgtccctttggcattgtgtaagtactgcaagtcaaaatgcttagatgttttgtcttta
>TU243042
acatttttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaattacaaaaacctgcaaaaacaaaacaaaatacattacagtaggtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctctctccatcaccttcctggccatccatccgctgcagtctgtttggccataaattctcatcaacattgcatctgatatgttctttagcaatgcactgtgggaagaatgcctgagccatcctctacactgatcgccacaggactatataatcattatatcatCACAGGACTATATCATCGTTATATAATCACAGGACTAGCATCAAAGAACTAGCACCAGGCCAAGATGTATACAGTGGATAgaaaaagtctacacacccctgttcaaatggtaggtttttgtgatgtaaaaaaattacaataagacaaataatttctacctataatgtgacctataacctgtacaatgcaattgaaaaacaaacagaaatctttcagggaggtgaagtaaaaataaacaactgagatATTGAGGTTGCATAAGTGTGCACACCCTTTTATAACTAGggg
>TU243043
acatttttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaattacaaaaacctgcaaaaacaaaacaaaatacattacagtaggtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctctctccatcaccttcctggccatccatccgctgcagtctgtttggccataaattctcatcaacattgcatctgatatgttctttagcaatgcactgtgggaagaatgcctgagccatcctctacactgatcgccacaggactatataatcattatatcatCACAGGACTATATCATCGTTATATAATCACAGGACTAGCATCAAAGAACTAGCACCAGGCCAAGATGTATACAGTGGATAgaaaaagtctacacacccctgttcaaatggtaggtttttgtgatgtaaaaaaattacaataagacaaataatttctacctataatgtgacctataacctgtacaatgcaattgaaaaacaaacagaaatctttcagggaggtgaagtaaaaataaacaactgagatATTGAGGTTGCATAAGTGTGCACACCCTTTTATAACTAGggg
>TU243044
acatttttacacattactgtaggtagaaagaaaagaaaatactaaggaaaatgtatcaaatatactatgtatacaaattacaaaaacctgcaaaaacaaaacaaaatacattacagtaggtaaaaaaacagtcaagcatcacaaatgcaatacagtaacattctgactactctgtgtcactcccctctctccatcaccttcctggccatccatccgctgcagtctgtttggccataaattctcatcaacattgcatctgatatgttctttagcaatgcactgtgggaagaatgcctgagccatcctctacactgatcgccacaggactatataatcattatatcatCACAGGACTATATCATCGTTATATAATCACAGGACTAGCATCAAAGAACTAGCACCAGGCCAAGATGTATACAGTGGATAgaaaaagtctacacacccctgttcaaatggtaggtttttgtgatgtaaaaaaattacaataagacaaataatttctacctataatgtgacctataacctgtacaatgcaattgaaaaacaaacagaaatctttcagggaggtgaagtaaaaataaacaactgagatATTGAGGTTGCATAAGTGTGCACACCCTTTTATAACTAGggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243037 True 931 lncRNA 0.37 2 26884416 26886339
TU243038 False 634 lncRNA 0.36 3 26884416 26889099
TU243039 False 931 lncRNA 0.37 2 26884416 26886339
TU243042 False 634 lncRNA 0.36 3 26884416 26889099
TU243043 False 634 lncRNA 0.36 4 26884416 26889099
TU243044 False 634 lncRNA 0.36 4 26884416 26889099

Neighbor

gene id symbol gene type direction distance location
nle1 nle1,LOC107720672,LOC107708614 coding upstream 90916 26783048 ~ 26793500 (+)
LOC103021428 LOC108410728,LOC108277327 coding upstream 193414 26081795 ~ 26691002 (+)
LOC103045760 LOC108410697 coding upstream 1241100 25625356 ~ 25643316 (+)
LOC103045464 pitpnab,pitpna,LOC103045464,LOC108276543,LOC105890453,LOC108237022,LOC108410689,LOC107386993 coding upstream 1267192 25589823 ~ 25617224 (+)
LOC103044955 slc43a2b,LOC103044955,LOC108410672,LOC108277386,LOC107701113,LOC107720664,LOC107684998 coding upstream 1297853 25557064 ~ 25586563 (+)
LOC103026363 LOC108424538 coding downstream 8371 26897470 ~ 26902329 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding downstream 13740 26902839 ~ 26909223 (+)
LOC103031870 NA coding downstream 31985 26921084 ~ 26926573 (+)
sytl2 sytl2 coding downstream 52252 26941351 ~ 26972401 (+)
crebzf crebzf coding downstream 94151 26983250 ~ 26988348 (+)
G179335 NA non-coding upstream 31433 26852695 ~ 26852983 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding upstream 85214 26794403 ~ 26799202 (+)
G179239 NA non-coding upstream 483149 26401008 ~ 26401267 (+)
G179183 NA non-coding upstream 915624 25964643 ~ 25968792 (+)
G179177 NA non-coding upstream 1005561 25878643 ~ 25878855 (+)
G179390 NA non-coding downstream 165850 27054949 ~ 27055164 (+)
G179399 NA non-coding downstream 217204 27106303 ~ 27106693 (+)
G179404 NA non-coding downstream 262015 27151114 ~ 27240082 (+)
G179416 NA non-coding downstream 332803 27221902 ~ 27232612 (+)
G179371 NA non-coding downstream 555678 27444777 ~ 27447272 (+)
LOC103024073 LOC108424537 other upstream 5333 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 1626947 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2429794 24447792 ~ 24454622 (+)
G178485 NA other upstream 3919427 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 4174859 22689001 ~ 22709557 (+)
rnasek rnasek,LOC107554319 other downstream 24651 26913750 ~ 26916344 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 635203 27524302 ~ 27525441 (+)
G180235 erg other downstream 4250245 31139344 ~ 31151095 (+)
G180266 NA other downstream 4544099 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 5375899 32264998 ~ 32273798 (+)

Expression


Co-expression Network