rnasek (rnasek,LOC107554319)


Basic Information

Item Value
gene id rnasek
gene name rnasek,LOC107554319
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26913750 ~ 26916344 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243054
GTTTGCTGGAGCGGACGGTGACTGACAGTCGTTTGTGAAGCTGCATCGTCTTTACTGGGTCCAGCAGTTCGGAAACGATGCCGTCTCTTTTGTTTTGTGGCCCCAAACTGGCGGCCTGCGGGATTGTGCTCAGCGTGTGGGGAGTCATAATGCTGGCAATGCTAGGTATCTTCTTTTGTTCGAAATCTGCTGTGCTGATTGAGGACGTTCCCTTCACTGAGGAAGACATCCGAAACGACAAAAGTCCACCCCAGAACGTTTATGCACTGTACAACCAAGTAGGCATCAACTGTTTCATTGCTGCGGCCATCTACGTCGGTGTTGGCGCTGTGTCTCTGTGCCAAGTTCGCCTGAACAAACGTCAGGAGTACATGGTCACATAAGCTACACACGTTCATAGAATTGAATGTGTTCTAATCATCCaatcattatttatttgaagGTGGTTAATGTGAAGACCTGTGGATTAGTattctatttattatattgGAGTGATTCCAGTAGAAAGTTTATGCTTACCCTCTTAAGAAATATtgacaaatatatacacagagaCAAATTATTTGGGCCTAATTTCCCAAAAATGTCTAGGTTTTAAGATCATCTTAACAGATAGTGATTCTTGTTCTACGTGTAAAATCCTTATGCTAAGATGGTTTTGGGAAATCCAGCCCTGATCAAATAACTGTTATTCAGTTATCAGTTACTATGTTCATATGCATGTATGTGACTGTGTCTTTTTGAAACCCACTGAGCACTACTAGTGTCATGTTTTGAGAAAGAAATACATTCctagtgaaagaaaaaaagtaaagaatgaTAATTGAACTGAGTGGACCACAGTAAACACAGTTAATGATAAGCCATACACTAAAAGAATACATgtgctttatttaataatgGTGTTTATTTAATGCACTATTTAATACACTGATTCATTGTTCATGTCATGTTCTAATTTATTaactacttttatttattttgtgttcctCCCTTGTTGGTTTACTTGATGTGGTTTCTGTTACATTATGAAAGTGCtgtttgtgattgtgattgCATTGTGAATAACATGTGAAGTGGAAATAAAAAGGTCCATTGTTTCAacactt
>XM_007236211.3
AATAAACTGATAGCCCGGAATGCACTGCGAGAAAGTGTTGGCTTGTGATTGGCTCCTGAGGAAAAAACGAACCAGAGAACGAACCCAGCCGAAGAAAATCGAAGATAGCCGAAGCGGCCTGCGACCATTTTCAGCCGTTTGCTGGAGCGGACGGTGACTGACAGTCGTTTGTGAAGCTGCATCGTCTTTACTGGGTCCAGCAGTTCGGAAACGATGCCGTCTCTTTTGTTTTGTGGCCCCAAACTGGCGGCCTGCGGGATTGTGCTCAGCGTGTGGGGAGTCATAATGCTGGCAATGCTAGGTATCTTCTTTTGTTCGAAATCTGCTGTGCTGATTGAGGACGTTCCCTTCACTGAGGAAGACATCCGAAACGACAAAAGTCCACCCCAGAACGTTTATGCACTGTACAACCAAGTAGGCATCAACTGTTTCATTGCTGCGGCCATCTACGTCGGTGTTGGCGCTGTGTCTCTGTGCCAAGTTCGCCTGAACAAACGTCAGGAGTACATGGTCACATAAGCTACACACGTTCATAGAATTGAATGTGTTCTAATCATCCaatcattatttatttgaagGTGGTTAATGTGAAGACCTGTGGATTAGTattctatttattatattgGAGTGATTCCAGTAGAAAGTTTATGCTTACCCTCTTAAGAAATATtgacaaatatatacacagagaCAAATTATTTGGGCCTAATTTCCCAAAAATGTCTAGGTTTTAAGATCATCTTAACAGATAGTGATTCTTGTTCTACGTGTAAAATCCTTATGCTAAGATGGTTTTGGGAAATCCAGCCCTGATCAAATAACTGTTATTCAGTTATCAGTTACTATGTTCATATGCATGTATGTGACTGTGTCTTTTTGAAACCCACTGAGCACTACTAGTGTCATGTTTTGAGAAAGAAATACATTCctagtgaaagaaaaaaagtaaagaatgaTAATTGAACTGAGTGGACCACAGTAAACACAGTTAATGATAAGCCATACACTAAAAGAATACATgtgctttatttaataatgGTGTTTATTTAATGCACTATTTAATACACTGATTCATTGTTCATGTCATGTTCTAATTTATTaactacttttatttattttgtgttcctCCCTTGTTGGTTTACTTGATGTGGTTTCTGTTACATTATGAAAGTGCtgtttgtgattgtgattgCATTGTGAATAACATGTGAAGTGGAAATAAAAAGGTCCATTGTTTCAa

Function

symbol description
rnasek Enables endoribonuclease activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic. Predicted to be integral component of membrane.

NR:

description
PREDICTED: ribonuclease kappa

GO:

id name namespace
GO:0009303 rRNA transcription biological_process
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004521 endoribonuclease activity molecular_function

KEGG:

id description
K19770 RNASEK; ribonuclease kappa

RNA

RNA id representative length rna type GC content exon number start site end site
TU243054 False 1109 TUCP 0.38 3 26913886 26916344
XM_007236211.3 True 1240 mRNA 0.40 3 26913750 26916339

Neighbor

gene id symbol gene type direction distance location
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding upstream 4527 26902839 ~ 26909223 (+)
LOC103026363 LOC108424538 coding upstream 11421 26897470 ~ 26902329 (+)
LOC103025645 LOC108424540 coding upstream 17563 26880649 ~ 26896187 (+)
nle1 nle1,LOC107720672,LOC107708614 coding upstream 120250 26783048 ~ 26793500 (+)
LOC103021428 LOC108410728,LOC108277327 coding upstream 222748 26081795 ~ 26691002 (+)
LOC103031870 NA coding downstream 4740 26921084 ~ 26926573 (+)
sytl2 sytl2 coding downstream 25007 26941351 ~ 26972401 (+)
crebzf crebzf coding downstream 66906 26983250 ~ 26988348 (+)
LOC103046108 dlg2,LOC107747009 coding downstream 77252 26993596 ~ 27443231 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding downstream 579771 27496115 ~ 27510446 (+)
G179345 NA non-coding upstream 24651 26884416 ~ 26889099 (+)
G179335 NA non-coding upstream 60767 26852695 ~ 26852983 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding upstream 114548 26794403 ~ 26799202 (+)
G179239 NA non-coding upstream 512483 26401008 ~ 26401267 (+)
G179183 NA non-coding upstream 944958 25964643 ~ 25968792 (+)
G179390 NA non-coding downstream 138605 27054949 ~ 27055164 (+)
G179399 NA non-coding downstream 189959 27106303 ~ 27106693 (+)
G179404 NA non-coding downstream 234770 27151114 ~ 27240082 (+)
G179416 NA non-coding downstream 305558 27221902 ~ 27232612 (+)
G179371 NA non-coding downstream 528433 27444777 ~ 27447272 (+)
LOC103024073 LOC108424537 other upstream 34667 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 1656281 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2459128 24447792 ~ 24454622 (+)
G178485 NA other upstream 3948761 22963447 ~ 22964989 (+)
G178388 hmgcs1,LOC108427280,LOC108277226,LOC107737058 other upstream 4204193 22689001 ~ 22709557 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 607958 27524302 ~ 27525441 (+)
G180235 erg other downstream 4223000 31139344 ~ 31151095 (+)
G180266 NA other downstream 4516854 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 5348654 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 6133898 33050242 ~ 33067932 (+)

Expression


Co-expression Network