LOC103038954 (zgc:101846,LOC106525086,LOC108416226,LOC101161532)


Basic Information

Item Value
gene id LOC103038954
gene name zgc:101846,LOC106525086,LOC108416226,LOC101161532
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27524302 ~ 27525441 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243090
ATAGCGGAGAGCTCTCTGGTGGCTGGTGCAGCACtgctgttataataataatactacaaCAACAAAGAATTTGTATACAAGCGAGACAGCTGGTAGTTCAGACATGTCTGGAAGGGGGAAAACCGGAGGCAAAGCTCGGGCTAAAGCGAAGTCTCGCTCTTCGAGAGCAGGGCTCCAGTTTCCAGTGGGTCGTGTCCACAGACTGTTACGCAAAGGGAATTACGCGGAGCGCGTAGGAGCCGGGGCTCCTGTGTACTTGGCCGCGGTGCTGGAGTACCTGACGGCTGAGATCCTCGAGTTGGCTGGAAACGCAGCGAGGGACAACAAAAAGACCAGGATCATCCCCCGCCACCTGCAGCTGGCCGTGCGCAACGACGAGGAGCTGAATAAACTTTTAGGCGGTGTGACCATCGCCCAGGGTGGAGTGCTGCCAAACATCCAGGCCGTCCTCCTGCCCAAGAAAACGGAGAAGCCCGCAAAGAGCAAGTAATCAATCATCGGCTTTTGTGAGCGAGGACATTGGCATATAACGGCTCTGTAAGGAGCCCCCATTTTCAGCAGAAGGTGTTGTTTCTTGTTCTTACTTTTACGTTGCAGTGTGTTGTTCGTTTTCGTTCTGCGACGAAAAATCTAAACTAAACAATGCTTCATGTACACTATTGATTTATAAcctatatgtattattttttgctgttgATGTTTCCTGGATGAttccctgtgtgtgtatgtatgtatgagaaGGACACTAGcactagctaaaaccaacactgGCTATAAAAATGGCCGAGGGACGCGTTTCAAAACAACTTgctgttaaaacacacacaaaggagGTGAAGGTCCTGgcagcctgctgctgctgcgctgcACCCTTCACAGAccatgatgattatgatgaggATTATTATTATGGACCAACGCTGGTTACCGTCGTCTCTGTCACGACCTGTTATTAATGACTCTCTATACATATATCTACTGAACCGTGAACCTGTTTTATGTTCTGTTCTCCCCGCTGTTTTAACGTTTGGTTTCAATAAATGTTGAGCGCCTCAGAAAGGCACAAAGACAC
>TU243091
ATAGCGGAGAGCTCTCTGGTGGCTGGTGCAGCACtgctgttataataataatactacaaCAACAAAGAATTTGTATACAAGCGAGACAGCTGGTAGTTCAGACATGTCTGGAAGGGGGAAAACCGGAGGCAAAGCTCGGGCTAAAGCGAAGTCTCGCTCTTCGAGAGCAGGGCTCCAGTTTCCAGTGGGTCGTGTCCACAGACTGTTACGCAAAGGGAATTACGCGGAGCGCGTAGGAGCCGGGGCTCCTGTGTACTTGGCCGCGGTGCTGGAGTACCTGACGGCTGAGATCCTCGAGTTGGCTGGAAACGCAGCGAGGGACAACAAAAAGACCAGGATCATCCCCCGCCACCTGCAGCTGGCCGTGCGCAACGACGAGGAGCTGAATAAACTTTTAGGCGGTGTGACCATCGCCCAGGGTGGAGTGCTGCCAAACATCCAGGCCGTCCTCCTGCCCAAGAAAACGGAGAAGCCCGCAAAGAGCAAGTAATCAATCATCGGCTTTTGTGAGCGAGGACATTGGCATATAACGGCTCTGTAAGGAGCCCCCATTTTCAGCAGAAGGTGTTGTTTCTTGTTCTTACTTTTACGTTGCAGTGTGTTGTTCGTTTTCGTTCTGCGACGAAAAATCTAAACTAAACAATGCTTCATGTACACTATTGATTTATAAcctatatgtattattttttgctgttgATGTTTCCTGGATGAttccctgtgtgtgtatgtatgtatgagaaGGACACTAGcactagctaaaaccaacactgGCTATAAAAATGGCCGAGGGACGCGTTTCAAAACAACTTgctgttaaaacacacacaaaggagGTGAAGGTCCTGgcagcctgctgctgctgcgctgcACCCTTCACAGAccatgatgattatgatgaggATTATTATTATGGACCAACGCTGGTTACCGTCGTCTCTGTCACGACCTGTTATTAATGACTCTCTATACATATATCTACTGAACCGTGAACCTGTTTTATGTTCTGTTCTCCCCGCTGTTTTAACGTTTGGTTTCAATAAATGTTGAGCGCCTCAGAAAGGCACAAAGACACGCAGTGAATCAGTGTTTCATTTcagagccacacacacacacacacacacaga
>XM_007243427.2
CTGCTTAACTTACATCATAGCGGAGAGCTCTCTGGTGGCTGGTGCAGCACtgctgttataataataatactacaaCAACAAAGAATTTGTATACAAGCGAGACAGCTGGTAGTTCAGACATGTCTGGAAGGGGGAAAACCGGAGGCAAAGCTCGGGCTAAAGCGAAGTCTCGCTCTTCGAGAGCAGGGCTCCAGTTTCCAGTGGGTCGTGTCCACAGACTGTTACGCAAAGGGAATTACGCGGAGCGCGTAGGAGCCGGGGCTCCTGTGTACTTGGCCGCGGTGCTGGAGTACCTGACGGCTGAGATCCTCGAGTTGGCTGGAAACGCAGCGAGGGACAACAAAAAGACCAGGATCATCCCCCGCCACCTGCAGCTGGCCGTGCGCAACGACGAGGAGCTGAATAAACTTTTAGGCGGTGTGACCATCGCCCAGGGTGGAGTGCTGCCAAACATCCAGGCCGTCCTCCTGCCCAAGAAAACGGAGAAGCCCGCAAAGAGCAAGTAATCAATCATCGGCTTTTGTGAGCGAGGACATTGGCATATAACGGCTCTGTAAGGAGCCCCCATTTTCAGCAGAAGGTGTTGTTTCTTGTTCTTACTTTTACGTTGCAGTGTGTTGTTCGTTTTCGTTCTGCGACGAAAAATCTAAACTAAACAATGCTTCATGTACACTATTGATTTATAAcctatatgtattattttttgctgttgATGTTTCCTGGATGAttccctgtgtgtgtatgtatgtatgagaaGGACACTAGcactagctaaaaccaacactgGCTATAAAAATGGCCGAGGGACGCGTTTCAAAACAACTTgctgttaaaacacacacaaaggagGTGAAGGTCCTGgcagcctgctgctgctgcgctgcACCCTTCACAGAccatgatgattatgatgaggATTATTATTATGGACCAACGCTGGTTACCGTCGTCTCTGTCACGACCTGTTATTAATGACTCTCTATACATATATCTACTGAACCGTGAACCTGTTTTATGTTCTGTTCTCCCCGCTGTTTTAACGTTTGGTTTCAATAAATGTTGAGCGCCTCAGAAAGGCACAAAGACA

Function

NR:

description
histone 2, H2a

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243090 False 1072 TUCP 0.48 1 27524318 27525389
TU243091 True 1124 TUCP 0.48 1 27524318 27525441
XM_007243427.2 False 1087 mRNA 0.48 1 27524302 27525388

Neighbor

gene id symbol gene type direction distance location
hyou1 hyou1,LOC107577052,LOC107691632 coding upstream 13856 27496115 ~ 27510446 (+)
LOC103046108 dlg2,LOC107747009 coding upstream 81071 26993596 ~ 27443231 (+)
crebzf crebzf coding upstream 535954 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 551901 26941351 ~ 26972401 (+)
LOC103031870 NA coding upstream 597729 26921084 ~ 26926573 (+)
crtam NA coding downstream 28761 27554202 ~ 27560568 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding downstream 36422 27561863 ~ 27566576 (+)
c20h11orf63 NA coding downstream 42287 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 147508 27672949 ~ 28385095 (+)
tmem218 tmem218 coding downstream 1565180 29090621 ~ 29098792 (+)
G179370 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924 non-coding upstream 193 27523186 ~ 27524109 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 30961 27492691 ~ 27493341 (+)
G179433 ift46,ck060 non-coding upstream 51581 27470120 ~ 27472721 (+)
G179432 NA non-coding upstream 54352 27469717 ~ 27469950 (+)
G179428 NA non-coding upstream 57943 27449402 ~ 27466359 (+)
G179638 NA non-coding downstream 857520 28382961 ~ 28384209 (+)
G179599 NA non-coding downstream 864324 28389765 ~ 28478787 (+)
G179639 NA non-coding downstream 963886 28489327 ~ 28489645 (+)
G179735 NA non-coding downstream 1087714 28613155 ~ 28613473 (+)
G179745 NA non-coding downstream 1103323 28628764 ~ 28628999 (+)
rnasek rnasek,LOC107554319 other upstream 607958 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 645219 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 2266833 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 3069680 24447792 ~ 24454622 (+)
G178485 NA other upstream 4559313 22963447 ~ 22964989 (+)
G180235 erg other downstream 3613903 31139344 ~ 31151095 (+)
G180266 NA other downstream 3907757 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 4739557 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5524801 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 6647483 34172924 ~ 34328970 (+)

Expression


Co-expression Network