G179370 (zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924)


Basic Information

Item Value
gene id G179370
gene name zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27523186 ~ 27524109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243093
TCATGAATGTGACatggatttgtttttatttgcacaACAAAGCAATTATTTCACATGTTTTCTGAGGCTTTtgggtattaatgttattttacgCCCCCAGGCACAGACCCCAGAACCTGGGGGTTACGCACCACATCTGCAATTACATGGTCATGATCATCACACATGCAAAAAAAGACATGAGTTCTGAATTAAGACAGGAACATTCAACAGAGATTTGGCCATAAAATTGGAGAGGAAAGCATCAAAGCAATTCCCAAggcttaaaaatacaaaacaaacagaaaaatcaaGAAAACAAGAGGCGAGTTACTGAGATACAGTATTGTCCAGAATGCTCcttcagaatgtttttttttcttttgcccaACATGCGATACCGAGCCACCACCACCAGTAGATCACCCCCCGTCAGTCTCCTCCCTCCACAGAAACAGTGGCAGAGCTCTTCCGTCCACGTTCATCCATCATGTCTCGTGCTCGCCCTTTCATTCACTTGGAGCTCGTGTACTTCGTCACAGCCTTGGTGCCTTCCGAAACGGCGTGCTTGGCGAGCTCTCCCGGCAAAAGCAGGCGCACAGCCGTCTGAATCTCTCGGGAGGTGATGGTGGAGCGCTTGTTGTAGTGGGCAAGGCGAGAGGCTTCTCCAGCAATGCGCTCGAAGATGTCATTCACAAACGAATTCATAATGCCCATTGCCTTAGAGGAGATGCCCGTGTCCGGGTGGACCTGTTTCAACACTTTGTACACATAAATGGCGTAACTTTCTTTCCTGGTCTTGCGCCTTTTCTTATCCCCTTTCTTCTGCGTCTTGGTCACTGCCTTTTTCGAGCCCTTTTTGGGGGCAGGGGCGGATTTCGCTGGCTCGGGCATCTTGTGTGATTTGtttcagtcagccagtcagtccAAATCTCTCAGGCTCAG

Function

symbol description
hist2h2l Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Located in chromatin. Is expressed in gill; heart; muscle; pleuroperitoneal region; and proliferative region. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).
zgc:194989 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).

NR:

description
PREDICTED: histone H2B 1/2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243093 True 924 lncRNA 0.48 1 27523186 27524109

Neighbor

gene id symbol gene type direction distance location
hyou1 hyou1,LOC107577052,LOC107691632 coding upstream 12740 27496115 ~ 27510446 (+)
LOC103046108 dlg2,LOC107747009 coding upstream 79955 26993596 ~ 27443231 (+)
crebzf crebzf coding upstream 534838 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 550785 26941351 ~ 26972401 (+)
LOC103031870 NA coding upstream 596613 26921084 ~ 26926573 (+)
crtam NA coding downstream 30093 27554202 ~ 27560568 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding downstream 37754 27561863 ~ 27566576 (+)
c20h11orf63 NA coding downstream 43619 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 148840 27672949 ~ 28385095 (+)
tmem218 tmem218 coding downstream 1566512 29090621 ~ 29098792 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 29845 27492691 ~ 27493341 (+)
G179433 ift46,ck060 non-coding upstream 50465 27470120 ~ 27472721 (+)
G179432 NA non-coding upstream 53236 27469717 ~ 27469950 (+)
G179428 NA non-coding upstream 56827 27449402 ~ 27466359 (+)
G179429 NA non-coding upstream 71117 27451547 ~ 27452069 (+)
G179638 NA non-coding downstream 858852 28382961 ~ 28384209 (+)
G179599 NA non-coding downstream 865656 28389765 ~ 28478787 (+)
G179639 NA non-coding downstream 965218 28489327 ~ 28489645 (+)
G179735 NA non-coding downstream 1089046 28613155 ~ 28613473 (+)
G179745 NA non-coding downstream 1104655 28628764 ~ 28628999 (+)
rnasek rnasek,LOC107554319 other upstream 606842 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 644103 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 2265717 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 3068564 24447792 ~ 24454622 (+)
G178485 NA other upstream 4558197 22963447 ~ 22964989 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 193 27524302 ~ 27525441 (+)
G180235 erg other downstream 3615235 31139344 ~ 31151095 (+)
G180266 NA other downstream 3909089 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 4740889 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5526133 33050242 ~ 33067932 (+)

Expression


Co-expression Network