G179371


Basic Information

Item Value
gene id G179371
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27444777 ~ 27447272 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243094
GTGAGGATACAAAGTTTTGACAAGACAGCGAAGATATATTCATGTGTAAAAAATTGTATACACACTGAAACTTCAATGTACCACCTTTTCCAGATCATTTACATTATTAAGTtaattttaagctttttaaaagctAAATGCCATGAACATTTTTCTTCCAAAGATATTTCAttccaagtattttttttttctgactccCCCAAGCCCCTCACCATTAGTGTGCATGTTATATGTAGCATATCAATCCTACAAGTATCAATTGCTGATGTGTTTATGGCCTAAAcagtttacagtaaatatatactttttgagCCACATTTTGTCCACAGTAAAGTCGTGCTGAAGCATGTGCTTAAGATGCAGCAGCCAACACAGCTGACTTTGGGTTCAGTCGACACAGGCCTTACGGTATGACTACTGTATCCCCTTCCATTAGAACATCTCACCTTAAAATTCGCTTAGCTCAATAAGTTTAGGCTGATTTCATGCTTGGCGTGTTCAGAAGACCTCATCACCTTCCAGATTGTGTGCACTGGAGTGACTGGAGAGGGTCCCTGCAGCGTTATGGTGCTCCCTGTACAATTAAGTCCCCTTCGAAAATGATCAGCGTActaaaaatgaactgaaatgcaATTGTATTTTCTCTCAGGGTTGCCACATAGGGCGCAAGAACAGAAAACCACACCCGAGTCAGAGGACAACAGCTGGAAATTATGTTACAATGgaaataatttgtatttatagtttcatttgttttgttttctccttCATTTGAATTTGACGTTTTGTAagttggttttgtttgtttgtaatttgAATCTTCCCTACGCACACTGAAGtgcaatataaagaaaatattctgtgacctccccttttacacacacacacacacacacacacacacacttaatatgTAAAATGTGCAATGTTGTAAATAAAGGGCCAGTTGGCACTTTAGTCTGTCAGACAGGAAAAACAGGCCTaaacctttttactttttttaatttatttcttttctttttaatctcATTAAGCAGAAATGCACCTAGAAAACACTTCCAGCTCCCCCTCCCTCCTTTCTGACTGTACATACTGTTTGTGTTGCCTCATTCCATGGTTGTAAGCGTCTAAAGCACACTTAACACGAGTGGGTCTGTACAGTTATCACAGGCGTTCTTAAATGAATAATtgagttcatttttttatttttattttcaaagaaaaaaaaactgaaaaggaaAAGGAACGTGTCCTTTTGCATCATGTTGCAGTATGTACTCCTGATTGCTTTGAAGaatcacaattaaaaaaaaaaaaaaaaaaaaaatgaaagttgcTTTAGGCGTATGTGAAGGCTCTCCACTCAGCCTCCATCTCTACTAATGTAAATTAAAGCTTTGGTGAGACTTTTCCACACAAACTGTCTGTCTCCTTTGTGTTGGGGTAGGACGGGTCAGGGGTTGATTTAGTGTTTTCACTCTCCATGTCCAATGTTAGCTGTTTTGGCTTTGCTCTGATTATTCCACTTACAGGGCTAAATGTCAGGATTGAAGTGGTTTTTAGAACTCTGTATAAAATGAACAataactcacactcactcattgGGGTTAATCACAAGTTTAATTGCAATGAAAGCTTATTAGAAATAGATACAGCTGGCTacaggagcggcataaagttgtccaaaagcagtgtgaaagactggtggaggagaaaatgccaagatggatgaaaactttgattaaaaaacagttattccaccaaattttgatttctaaaatcttaaaacttaTGATTATCAAGtatcatttaactcaaacatatacctataaattatACTATAATGGTACCTGTCACAGGGGTGGAATATATTACAGGAAGTGAACAGTTAGTTCTTtaaggctgaaaaaaaaattgacaagaGTAAGAATCTGAGCCATAGTATGATAGTTATATAAGATAAGATCTTCCATGTAACATGACAGAAGTCATAGGGCATAATTCTAGTGCCATGCAGCAAGACATCTGGCATTGCactgtaatatttaaatatgtatcagtggcgtgcagttaatatagtgggtaccccttctgcaacatcCCCCCATTTTACTTTAACCAATGCATAGCACCTTAACGCTGAGAAGGGATTAGACGTTCTTGGCCCCGCCtccgtagtgaaaatcatgattCTGATTGGATAGATTGTCCTGCAACTTTGCTAatatactcattactacacccatcaaaaaatcagcagaagggccattttaaaaagctttgattggttagaacggctgtcagtcagataagagtcctatagcaactgaaaaacgcagactaatgctttgaattagttgctgttttttattttagttaatttataaaatatatgcttatagtttacaataactataatatatgtttcctgattaaatattatgtaatgatttacatgcacctattgtcaccctttctctgaagggttagaagggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243094 True 2496 lncRNA 0.36 1 27444777 27447272

Neighbor

gene id symbol gene type direction distance location
LOC103046108 dlg2,LOC107747009 coding upstream 1546 26993596 ~ 27443231 (+)
crebzf crebzf coding upstream 456429 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 472376 26941351 ~ 26972401 (+)
LOC103031870 NA coding upstream 518204 26921084 ~ 26926573 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding upstream 535554 26902839 ~ 26909223 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding downstream 48843 27496115 ~ 27510446 (+)
crtam NA coding downstream 106930 27554202 ~ 27560568 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding downstream 114591 27561863 ~ 27566576 (+)
c20h11orf63 NA coding downstream 120456 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 225677 27672949 ~ 28385095 (+)
G179404 NA non-coding upstream 204695 27151114 ~ 27240082 (+)
G179416 NA non-coding upstream 212165 27221902 ~ 27232612 (+)
G179399 NA non-coding upstream 338084 27106303 ~ 27106693 (+)
G179390 NA non-coding upstream 389613 27054949 ~ 27055164 (+)
G179345 NA non-coding upstream 555678 26884416 ~ 26889099 (+)
G179427 NA non-coding downstream 123 27447395 ~ 27448989 (+)
G179428 NA non-coding downstream 2130 27449402 ~ 27466359 (+)
G179429 NA non-coding downstream 4275 27451547 ~ 27452069 (+)
G179432 NA non-coding downstream 22445 27469717 ~ 27469950 (+)
G179433 ift46,ck060 non-coding downstream 22848 27470120 ~ 27472721 (+)
rnasek rnasek,LOC107554319 other upstream 528433 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 565694 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 2187308 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2990155 24447792 ~ 24454622 (+)
G178485 NA other upstream 4479788 22963447 ~ 22964989 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 77030 27524302 ~ 27525441 (+)
G180235 erg other downstream 3692072 31139344 ~ 31151095 (+)
G180266 NA other downstream 3985926 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 4817726 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5602970 33050242 ~ 33067932 (+)

Expression


Co-expression Network