G179404


Basic Information

Item Value
gene id G179404
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27151114 ~ 27240082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243131
gcaccagtaagagcagagtgtgaaggttcaattagcaggataagagcacagttttgctcaaaatattgcaatgcacacaacattatgtgtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacgctatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccggcttgtatccaaaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243131 True 320 lncRNA 0.46 2 27151114 27240082

Neighbor

gene id symbol gene type direction distance location
crebzf crebzf coding upstream 162766 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 178713 26941351 ~ 26972401 (+)
LOC103031870 NA coding upstream 224541 26921084 ~ 26926573 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding upstream 241891 26902839 ~ 26909223 (+)
LOC103026363 LOC108424538 coding upstream 248785 26897470 ~ 26902329 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding downstream 256033 27496115 ~ 27510446 (+)
crtam NA coding downstream 314120 27554202 ~ 27560568 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding downstream 321781 27561863 ~ 27566576 (+)
c20h11orf63 NA coding downstream 327646 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 432867 27672949 ~ 28385095 (+)
G179399 NA non-coding upstream 44421 27106303 ~ 27106693 (+)
G179390 NA non-coding upstream 95950 27054949 ~ 27055164 (+)
G179345 NA non-coding upstream 262015 26884416 ~ 26889099 (+)
G179335 NA non-coding upstream 298131 26852695 ~ 26852983 (+)
G179320 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 non-coding upstream 351912 26794403 ~ 26799202 (+)
G179371 NA non-coding downstream 204695 27444777 ~ 27447272 (+)
G179427 NA non-coding downstream 207313 27447395 ~ 27448989 (+)
G179428 NA non-coding downstream 209320 27449402 ~ 27466359 (+)
G179429 NA non-coding downstream 211465 27451547 ~ 27452069 (+)
G179432 NA non-coding downstream 229635 27469717 ~ 27469950 (+)
rnasek rnasek,LOC107554319 other upstream 234770 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 272031 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 1893645 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2696492 24447792 ~ 24454622 (+)
G178485 NA other upstream 4186125 22963447 ~ 22964989 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 284220 27524302 ~ 27525441 (+)
G180235 erg other downstream 3899262 31139344 ~ 31151095 (+)
G180266 NA other downstream 4193116 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 5024916 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5810160 33050242 ~ 33067932 (+)

Expression


Co-expression Network