G179428


Basic Information

Item Value
gene id G179428
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27449402 ~ 27466359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243156
CTGTGATGTTCACATGTGCCTCTGACGTCCCAGCTTCATTTGAAACCCGACAGGTGTACGTGCCCGAGTCTGAGCGGTTCAGGTTAGACACATGCACAGTCAGGTTCCTCTCACTGATGCTGATTCTCTGGTCATCTGGCAGCAGGAGGCCGTTCCGAAACCAGCGCAGGTTCAGAAACTGTCCTCTCACCTCACACCTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243156 True 203 lncRNA 0.55 2 27449402 27466359

Neighbor

gene id symbol gene type direction distance location
LOC103046108 dlg2,LOC107747009 coding upstream 6171 26993596 ~ 27443231 (+)
crebzf crebzf coding upstream 461054 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 477001 26941351 ~ 26972401 (+)
LOC103031870 NA coding upstream 522829 26921084 ~ 26926573 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding upstream 540179 26902839 ~ 26909223 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding downstream 29756 27496115 ~ 27510446 (+)
crtam NA coding downstream 87843 27554202 ~ 27560568 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding downstream 95504 27561863 ~ 27566576 (+)
c20h11orf63 NA coding downstream 101369 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 206590 27672949 ~ 28385095 (+)
G179427 NA non-coding upstream 413 27447395 ~ 27448989 (+)
G179371 NA non-coding upstream 2130 27444777 ~ 27447272 (+)
G179404 NA non-coding upstream 209320 27151114 ~ 27240082 (+)
G179416 NA non-coding upstream 216790 27221902 ~ 27232612 (+)
G179399 NA non-coding upstream 342709 27106303 ~ 27106693 (+)
G179432 NA non-coding downstream 3358 27469717 ~ 27469950 (+)
G179433 ift46,ck060 non-coding downstream 3761 27470120 ~ 27472721 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding downstream 26332 27492691 ~ 27493341 (+)
G179370 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924 non-coding downstream 56827 27523186 ~ 27524109 (+)
G179638 NA non-coding downstream 916602 28382961 ~ 28384209 (+)
rnasek rnasek,LOC107554319 other upstream 533058 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 570319 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 2191933 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 2994780 24447792 ~ 24454622 (+)
G178485 NA other upstream 4484413 22963447 ~ 22964989 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 57943 27524302 ~ 27525441 (+)
G180235 erg other downstream 3672985 31139344 ~ 31151095 (+)
G180266 NA other downstream 3966839 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 4798639 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5583883 33050242 ~ 33067932 (+)

Expression


Co-expression Network