G179433 (ift46,ck060)


Basic Information

Item Value
gene id G179433
gene name ift46,ck060
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27470120 ~ 27472721 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243163
GTAACAGGATGAAGAAACATCTTAATTTTTAGCACAGTGTCAGAGAACAGCCTGGCTGAACATGCCTTCACTCCAGTAATGGAGAACAAAGCAAGTGTGTGGGATATCTTACAAAAAcaagcacaataaaaaaaaacaaacacaattaaAGCTAAGTGTATAACATTATCTGAAGTAATAAAACCACAACACTGATCTAAAATCCAAGTAcactattataaataaatatgcttCACCTGATTATTTGGGCAAAGCTATAGAAAGAAATGTTTGGTTTCATAAGAACCATTTTTTataaaagagaagagagtgtaaagaacctttaatttgggtgaaaaaaaagattacaaCCACTTCTTTAAACCTGTAAAAGTGATTATATGGCATCACTCAAATAATTCTTTGTAGTGTTATGCTGTGAGCTGGTACAGAAAATCTGTATTACCGTCCATTTATGCATGGTAGTGATCGTCTGGCCTTTAAGGAGTTATGAGCAGTTTCACAATGTCTTTGTGGTTGGGGAGGAAGATCACTCTAATGTCAGAGTCTCTGCTTCTGCTGTACCGGTGCGTGGAGCAGACGAAGTGGTGGACTTGTGGCCCTCTGCTAACGCCTTAAAGTGCTGGGAGTTCTTGAATTCAGAATAGAGTGTAAATAGAACATGGAGAGACTGGATTCGACTCTTATACACTGGAATGTCCAGGATACCACATATTATGTCGATGTATTCTGCCAAGTCACAGTTAATATCTGCTGTAGGAAGGTTTACCTTGCCCAAAAGCTCTTCAAACTCAGGTGGCCACTCCTGCATCAAGGTATCAATGTCTGGCATGGATct

Function

symbol description
ift46 Acts upstream of or within animal organ development; cilium assembly; and determination of ventral identity. Located in ciliary basal body. Is expressed in several structures, including forerunner cell group; nervous system; otic vesicle; pronephric duct; and spinal cord neural tube. Orthologous to human IFT46 (intraflagellar transport 46).

NR:

description
intraflagellar transport protein 46 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243163 True 838 lncRNA 0.38 4 27470120 27472721

Neighbor

gene id symbol gene type direction distance location
LOC103046108 dlg2,LOC107747009 coding upstream 26889 26993596 ~ 27443231 (+)
crebzf crebzf coding upstream 481772 26983250 ~ 26988348 (+)
sytl2 sytl2 coding upstream 497719 26941351 ~ 26972401 (+)
LOC103031870 NA coding upstream 543547 26921084 ~ 26926573 (+)
LOC103026857 LOC108424542,LOC101883815,LOC107702789,LOC107586167,LOC107675994,LOC107554304,LOC108277076 coding upstream 560897 26902839 ~ 26909223 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding downstream 23394 27496115 ~ 27510446 (+)
crtam NA coding downstream 81481 27554202 ~ 27560568 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding downstream 89142 27561863 ~ 27566576 (+)
c20h11orf63 NA coding downstream 95007 27567728 ~ 27623665 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding downstream 200228 27672949 ~ 28385095 (+)
G179432 NA non-coding upstream 170 27469717 ~ 27469950 (+)
G179428 NA non-coding upstream 3761 27449402 ~ 27466359 (+)
G179429 NA non-coding upstream 18051 27451547 ~ 27452069 (+)
G179427 NA non-coding upstream 21131 27447395 ~ 27448989 (+)
G179371 NA non-coding upstream 22848 27444777 ~ 27447272 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding downstream 19970 27492691 ~ 27493341 (+)
G179370 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924 non-coding downstream 50465 27523186 ~ 27524109 (+)
G179638 NA non-coding downstream 910240 28382961 ~ 28384209 (+)
G179599 NA non-coding downstream 917044 28389765 ~ 28478787 (+)
G179639 NA non-coding downstream 1016606 28489327 ~ 28489645 (+)
rnasek rnasek,LOC107554319 other upstream 553776 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 591037 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 2212651 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 3015498 24447792 ~ 24454622 (+)
G178485 NA other upstream 4505131 22963447 ~ 22964989 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 51581 27524302 ~ 27525441 (+)
G180235 erg other downstream 3666623 31139344 ~ 31151095 (+)
G180266 NA other downstream 3960477 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 4792277 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 5577521 33050242 ~ 33067932 (+)

Expression


Co-expression Network