G179490


Basic Information

Item Value
gene id G179490
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 26884446 ~ 26889085 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243232
tcacaaaaacctaccatttgaacaggggtgtgtagactttttcTATCCACTGTATACATCTTGGCCTGGTGCTAGTTCTTTGATGCTAGTCCTGTGATTATATAACGATGATATAGTCCTGTGatgatataatgattatatagtcctgtggcgatcagtgtagaggatggctcaggcattcttcccacagtgcattgctaaagaacatatcagatgcaatgttgatgagaatttatggccaaacagactgcagcggatggatggccaggaaggtgatggagagaggggagtgacacagagtagtcagaatgttactgtattgcatttgtgatgcttgactgtttttttacctactgtaatgtattttgttttgtttttgcaggtttttgtaatttgtatacatagtatatttgatacattttccttagtattttctttt
>TU243233
AGGGTGTGCACACTTATGCAACCTCAATatctcagttgtttatttttacttcacctccctgaaagatttctgtttgtttttcaattgcattgtacaggttataggtcacattataggtagaaattatttgtcttattgtaatttttttacatcacaaaaacctaccatttgaacaggggtgtgtagactttttcTATCCACTGTATACATCTTGGCCTGGTGCTAGTTCTTTGATGCTAGTCCTGTGATTATATAACGATGATATAGTCCTGTGatgatataatgattatatagtcctgtggcgatcagtgtagaggatggctcaggcattcttcccacagtgcattgctaaagaacatatcagatgcaatgttgatgagaatttatggccaaacagactgcagcggatggatggccaggaaggtgatggagagaggggagtgacacagagtagtcagaatgttactgtattgcatttgtgatgcttgactgtttttttacctactgtaatgtattttgttttgtttttgcaggtttttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243232 False 439 lncRNA 0.38 2 26884446 26885877
TU243233 True 542 lncRNA 0.38 3 26885487 26889085

Neighbor

gene id symbol gene type direction distance location
LOC103023750 LOC108424450 coding downstream 58590 26822739 ~ 26825856 (-)
LOC103031551 NA coding downstream 69318 26811030 ~ 26815128 (-)
LOC103046333 slc25a1a,LOC108424536,LOC107586170,LOC107708615,LOC107720673,LOC107554324,LOC108276564,LOC105890537 coding downstream 85193 26794394 ~ 26799253 (-)
ltn1 ltn1 coding downstream 102269 26752892 ~ 26782177 (-)
LOC103044637 paxbp1,LOC107592156 coding downstream 1362048 25508722 ~ 25522398 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding upstream 20126 26909211 ~ 26912823 (-)
med11 med11,LOC107720680,LOC107676028 coding upstream 27249 26916334 ~ 26919843 (-)
LOC103028079 arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921 coding upstream 38084 26927169 ~ 26939923 (-)
tmem126a NA coding upstream 99532 26988617 ~ 26991633 (-)
LOC103044875 NA coding upstream 558266 27447351 ~ 27466674 (-)
G179487 LOC108424537 non-coding downstream 5023 26877576 ~ 26879423 (-)
G179475 NA non-coding downstream 9883 26872578 ~ 26874563 (-)
G179306 NA non-coding downstream 187870 26592235 ~ 26696576 (-)
G179304 NA non-coding downstream 316376 26567644 ~ 26568070 (-)
G179297 NA non-coding downstream 526086 26357983 ~ 26358360 (-)
G179524 NA non-coding upstream 121439 27010524 ~ 27010818 (-)
G179528 NA non-coding upstream 126660 27015745 ~ 27015966 (-)
G179572 hyou1,LOC107588517 non-coding upstream 616610 27505695 ~ 27507977 (-)
G179596 NA non-coding upstream 773902 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 777674 27666759 ~ 27667611 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1019972 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1412202 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 1581363 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 1677060 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 1750290 25130982 ~ 25134156 (-)
G179569 NA other upstream 551146 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 581001 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 634046 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 635243 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 672760 27561845 ~ 27566692 (-)

Expression


Co-expression Network