G179524


Basic Information

Item Value
gene id G179524
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27010524 ~ 27010818 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243276
GcgataatatggattagaacattaaacaaacagggctattcactgtatatcaactctaTCAACCTCTTCAcatctttacaactgatgctcccaaacacattaagatgacaagaaattcaagttattaTCTCTTGCAAAGCACAGctttaactgaaagcctgaattccaggtgactctacctcataaagctgactgagaaaatccagccaagatgtgcaaaactgtcatccaAGCAAGAAGTGCAACTTTGAAAACTCTAAAATATGAACTATATTCTGGTTGTTTACCAATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243276 True 295 lncRNA 0.36 1 27010524 27010818

Neighbor

gene id symbol gene type direction distance location
tmem126a NA coding downstream 18891 26988617 ~ 26991633 (-)
LOC103028079 arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921 coding downstream 70601 26927169 ~ 26939923 (-)
med11 med11,LOC107720680,LOC107676028 coding downstream 90681 26916334 ~ 26919843 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding downstream 97701 26909211 ~ 26912823 (-)
LOC103023750 LOC108424450 coding downstream 184668 26822739 ~ 26825856 (-)
LOC103044875 NA coding upstream 436533 27447351 ~ 27466674 (-)
LOC103045184 NA coding upstream 453221 27464039 ~ 27464863 (-)
vps11 vps11,LOC107691631,LOC107744603 coding upstream 469841 27480659 ~ 27493366 (-)
LOC103027279 NA coding upstream 500313 27511131 ~ 27518562 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding upstream 517842 27528660 ~ 27539710 (-)
G179490 NA non-coding downstream 121439 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 131101 26877576 ~ 26879423 (-)
G179475 NA non-coding downstream 135961 26872578 ~ 26874563 (-)
G179306 NA non-coding downstream 313948 26592235 ~ 26696576 (-)
G179304 NA non-coding downstream 442454 26567644 ~ 26568070 (-)
G179528 NA non-coding upstream 4927 27015745 ~ 27015966 (-)
G179572 hyou1,LOC107588517 non-coding upstream 494877 27505695 ~ 27507977 (-)
G179596 NA non-coding upstream 652169 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 655941 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 677308 27688126 ~ 27691388 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1146050 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1538280 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 1707441 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 1803138 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 1876368 25130982 ~ 25134156 (-)
G179569 NA other upstream 429413 27440231 ~ 27443316 (-)
ift46 ift46 other upstream 459268 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 512313 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 513510 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 551027 27561845 ~ 27566692 (-)

Expression


Co-expression Network