ift46 (ift46)


Basic Information

Item Value
gene id ift46
gene name ift46
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27470086 ~ 27477978 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243317
TCACTCTTATTCAGCAGTTAAGCATTGTGTGTTTACTGCCCTCTGGTCTCCAGGAGCATCGCGAGATCGGTCTCCTGGTAACGGAACACCGCCTGCGTTCATGGAGAGGTTTGAGCGACAGAAGACCAAGCTCATAACCAACCAGACATTTGACGAGACACTGGATGTTAACGATTCGGAAGAGGTTGCCAGTTTGTACACACCAACTCCACGAGAATCAGGAACAGGAGCAGACAGCAACTGAATACCATGGCCAACAACAGCAGTGATGAATATGAAGAAGATACCAAGaaaaagaaagaaccaCCTGGCAGTCCAAGAAGAGCTAGTGAAAAtaatgaggaagaggaggaggaagaagaagatgatgatgatgatgacgactGTGATGAAACTGACTCTGATGAAGAGGAAGGAGAGCCAGGTTCAGCTCCTGAAGGAGCATATGACCCGGCAGACTATGACCATCTACGcgttacagcagaaataaaagaacTTTTCCAGTACATTACACGATACACTCCACAGACTATAGAATTGGACCATAAGCTGAGACCATTCATTCCTGACTTCATCCCAGCTGTAGGGGACATTGATGCTTTCCTTAAAGTTCCTCGGCCTGATGGAAAAGCAGACGGTCTGGGACTGCTGGTTTTGGATGAACCCTGCGCCAAACAGTCTGATCCTACAGTGCTCTCCCTGTGGCTCTCGGAGAACAGTAAACAACACAACGTTGCTGAGGTGAAAGTGAAGAGTATTGAGAACCCACAGAAAAACCCCAAAGCCATCGATAACTGGATAGAAAGCATAAGTGAACTTCACCGTTCCAAACCACCAGCTACCGTACACTACACCAGGCAAGTGCTCTATAACATAGACAGAGTTTcagacacactgaaac
>XM_007258128.3
TAAGCATTGTGTGTTTACTGCCCTCTGGTCTCCAGGAGCATCGCGAGATCGGTCTCCTGGTAACGGAACACCGCCTGCGTTCATGGAGAGGTTTGAGCGACAGAAGACCAAGCTCATAACCAACCAGACATTTGACGAGACACTGGATGTTAACGATTCGGAAGAGGTTGCCAGTTTGTACACACCAACTCCACGAGAATCAGTCCTCAGGAACAGGAGCAGACAGCAACTGAATACCATGGCCAACAACAGCAGTGATGAATATGAAGAAGATACCAAGaaaaagaaagaaccaCCTGGCAGTCCAAGAAGAGCTAGTGAAAAtaatgaggaagaggaggaggaagaagaagatgatgatgatgatgacgactGTGATGAAACTGACTCTGATGAAGAGGAAGGAGAGCCAGGTTCAGCTCCTGAAGGAGCATATGACCCGGCAGACTATGACCATCTACGcgttacagcagaaataaaagaacTTTTCCAGTACATTACACGATACACTCCACAGACTATAGAATTGGACCATAAGCTGAGACCATTCATTCCTGACTTCATCCCAGCTGTAGGGGACATTGATGCTTTCCTTAAAGTTCCTCGGCCTGATGGAAAAGCAGACGGTCTGGGACTGCTGGTTTTGGATGAACCCTGCGCCAAACAGTCTGATCCTACAGTGCTCTCCCTGTGGCTCTCGGAGAACAGTAAACAACACAACGTTGCTGAGGTGAAAGTGAAGAGTATTGAGAACCCACAGAAAAACCCCAAAGCCATCGATAACTGGATAGAAAGCATAAGTGAACTTCACCGTTCCAAACCACCAGCTACCGTACACTACACCAGATCCATGCCAGACATTGATACCTTGATGCAGGAGTGGCCACCTGAGTTTGAAGAGCTTTTGGGCAAGGTAAACCTTCCTACAGCAGATATTAACTGTGACTTGGCAGAATACATCGACATAATATGTGGTATCCTGGACATTCCAGTGTATAAGAGTCGAATCCAGTCTCTCCATGTTCTATTTACACTCTATTCTGAATTCAAGAACTCCCAGCACTTTAAGGCGTTAGCAGAGGGCCACAAGTCCACCACTTCGTCTGCTCCACGCACCGGTACAGCAGAAGCAGAGACTCTGACATTAGAGTGATCTTCCTCCCCAACCACAAAGACATTGTGAAACTGCTCATAACTCCTTAAAGGCCAGACGATCACTACCATGCATAAATGGACGGTAATACAGATTTTCTGTACCAGCTCACAGCATAACACTACAAAGAATTATTTGAGTGATGCCATATAATCACTTTTACAGGTTTAAAGAAGTGGttgtaatcttttttttcacccaaattaaaggttctttacactctcttctcttttatAAAAAATGGTTCTTATGAAACCAAACATTTCTTTCTATAGCTTTGCCCAAATAATCAGGTGaagcatatttatttataatagtgTACTTGGATTTTAGATCAGTGTTGTGGTTTTATTACTTCAGATAATGTTATACACTTAGCTttaattgtgtttgtttttttttattgtgcttgTTTTTGTAAGATATCCCACACACTTGCTTTGTTCTCCATTACTGGAGTGAAGGCATGTTCAGCCAGGCTGTTCTCTGACACTGTGCTAAAAATTAAGATGTTTCTTCATCCTGTTACATTTTCaaataaagatttatttctTCAGAAGCAG

Function

symbol description
ift46 Acts upstream of or within animal organ development; cilium assembly; and determination of ventral identity. Located in ciliary basal body. Is expressed in several structures, including forerunner cell group; nervous system; otic vesicle; pronephric duct; and spinal cord neural tube. Orthologous to human IFT46 (intraflagellar transport 46).

NR:

description
intraflagellar transport protein 46 homolog

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0048264 determination of ventral identity biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19682 IFT46; intraflagellar transport protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
TU243317 False 901 TUCP 0.47 8 27473355 27477978
XM_007258128.3 True 1716 mRNA 0.42 12 27470086 27477960

Neighbor

gene id symbol gene type direction distance location
LOC103044875 NA coding downstream 3412 27447351 ~ 27466674 (-)
LOC103045184 NA coding downstream 5223 27464039 ~ 27464863 (-)
tmem126a NA coding downstream 478453 26988617 ~ 26991633 (-)
LOC103028079 arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921 coding downstream 530163 26927169 ~ 26939923 (-)
med11 med11,LOC107720680,LOC107676028 coding downstream 550243 26916334 ~ 26919843 (-)
vps11 vps11,LOC107691631,LOC107744603 coding upstream 2681 27480659 ~ 27493366 (-)
LOC103027279 NA coding upstream 33153 27511131 ~ 27518562 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding upstream 50682 27528660 ~ 27539710 (-)
bsx bsx,LOC107747047 coding upstream 113593 27591571 ~ 27594524 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding upstream 122114 27600092 ~ 27606283 (-)
G179528 NA non-coding downstream 454120 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 459268 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 581001 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 590663 26877576 ~ 26879423 (-)
G179475 NA non-coding downstream 595523 26872578 ~ 26874563 (-)
G179572 hyou1,LOC107588517 non-coding upstream 27717 27505695 ~ 27507977 (-)
G179596 NA non-coding upstream 185009 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 188781 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 210148 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 434852 27912830 ~ 27964374 (-)
G179569 NA other downstream 26770 27440231 ~ 27443316 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1605612 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1997842 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 2167003 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 2262700 25203325 ~ 25207386 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 45153 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 46350 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 83867 27561845 ~ 27566692 (-)
G179816 NA other upstream 1372712 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 3468968 30946946 ~ 30957767 (-)

Expression


Co-expression Network