LOC103038646 (zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012)


Basic Information

Item Value
gene id LOC103038646
gene name zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27523131 ~ 27524135 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243318
CTGAGCCTGAGAGATTTggactgactggctgactgaaaCAAATCACACAAGATGCCCGAGCCAGCGAAATCCGCCCCTGCCCCCAAAAAGGGCTCGAAAAAGGCAGTGACCAAGACGCAGAAGAAAGGGGATAAGAAAAGGCGCAAGACCAGGAAAGAAAGTTACGCCATTTATGTGTACAAAGTGTTGAAACAGGTCCACCCGGACACGGGCATCTCCTCTAAGGCAATGGGCATTATGAATTCGTTTGTGAATGACATCTTCGAGCGCATTGCTGGAGAAGCCTCTCGCCTTGCCCACTACAACAAGCGCTCCACCATCACCTCCCGAGAGATTCAGACGGCTGTGCGCCTGCTTTTGCCGGGAGAGCTCGCCAAGCACGCCGTTTCGGAAGGCACCAAGGCTGTGACGAAGTACACGAGCTCCAAGTGAATGAAAGGGCGAGCACGAGACATGATGGATGAACGTGGACGGAAGAGCTCTGCCACTGTTTCTGTGGAGGGAGGAGACTGACGGGGGGTGATCTACTGGTGGTGGTGGCTCGGTATCGCATGTtgggcaaaagaaaaaaaaacattctgaagGAGCATTCTGGACAATACTGTATCTCAGTAACTCGCCTCTTGTTTTCttgatttttctgtttgttttgtatttttaagccTTGGGAATTGCTTTGATGCTTTCCTCTCCAATTTTATGGCCAAATCTCTGTTGAATGTTCCTGTCTTAATTCAGAACTCATGTCTTTTTTTGCATGTGTGATGATCATGACCATGTAATTGCAGATGTGGTGCGTAACCCCCAGGTTCTGGGGTCTGTGCCTGGGGGcgtaaaataacattaatacccaAAAGCCTCAGAAAACATGTGAAATAATTGCTTTGTtgtgcaaataaaaacaaatccatGTCACATTCATGAACACAAAAATCTTGtccaattaaagaaataaacatgttGCTACATATTAACA
>XM_007243426.3
GCCACAGCGAATAAATGAGCAAACAGCTGAGCCTGAGAGATTTggactgactggctgactgaaaCAAATCACACAAGATGCCCGAGCCAGCGAAATCCGCCCCTGCCCCCAAAAAGGGCTCGAAAAAGGCAGTGACCAAGACGCAGAAGAAAGGGGATAAGAAAAGGCGCAAGACCAGGAAAGAAAGTTACGCCATTTATGTGTACAAAGTGTTGAAACAGGTCCACCCGGACACGGGCATCTCCTCTAAGGCAATGGGCATTATGAATTCGTTTGTGAATGACATCTTCGAGCGCATTGCTGGAGAAGCCTCTCGCCTTGCCCACTACAACAAGCGCTCCACCATCACCTCCCGAGAGATTCAGACGGCTGTGCGCCTGCTTTTGCCGGGAGAGCTCGCCAAGCACGCCGTTTCGGAAGGCACCAAGGCTGTGACGAAGTACACGAGCTCCAAGTGAATGAAAGGGCGAGCACGAGACATGATGGATGAACGTGGACGGAAGAGCTCTGCCACTGTTTCTGTGGAGGGAGGAGACTGACGGGGGGTGATCTACTGGTGGTGGTGGCTCGGTATCGCATGTtgggcaaaagaaaaaaaaacattctgaagGAGCATTCTGGACAATACTGTATCTCAGTAACTCGCCTCTTGTTTTCttgatttttctgtttgttttgtatttttaagccTTGGGAATTGCTTTGATGCTTTCCTCTCCAATTTTATGGCCAAATCTCTGTTGAATGTTCCTGTCTTAATTCAGAACTCATGTCTTTTTTTGCATGTGTGATGATCATGACCATGTAATTGCAGATGTGGTGCGTAACCCCCAGGTTCTGGGGTCTGTGCCTGGGGGcgtaaaataacattaatacccaAAAGCCTCAGAAAACATGTGAAATAATTGCTTTGTtgtgcaaataaaaacaaatccatGTCACATTCATGAACACAAAAATCTTGtccaattaaagaaataaacatgttGCTACATATTAACACCA

Function

symbol description
hist2h2l Predicted to enable DNA binding activity. Predicted to be involved in nucleosome assembly. Located in chromatin. Is expressed in gill; heart; muscle; pleuroperitoneal region; and proliferative region. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).
zgc:194989 Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be located in chromosome and nucleus. Predicted to be part of nucleosome. Orthologous to several human genes including H2BC21 (H2B clustered histone 21).

NR:

description
PREDICTED: histone H2B 1/2

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11252 H2B; histone H2B

RNA

RNA id representative length rna type GC content exon number start site end site
TU243318 False 976 TUCP 0.46 1 27523134 27524109
XM_007243426.3 True 1005 mRNA 0.46 1 27523131 27524135

Neighbor

gene id symbol gene type direction distance location
LOC103027279 NA coding downstream 4569 27511131 ~ 27518562 (-)
vps11 vps11,LOC107691631,LOC107744603 coding downstream 29765 27480659 ~ 27493366 (-)
LOC103044875 NA coding downstream 56457 27447351 ~ 27466674 (-)
LOC103045184 NA coding downstream 58268 27464039 ~ 27464863 (-)
tmem126a NA coding downstream 531498 26988617 ~ 26991633 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding upstream 4525 27528660 ~ 27539710 (-)
bsx bsx,LOC107747047 coding upstream 67436 27591571 ~ 27594524 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding upstream 75957 27600092 ~ 27606283 (-)
LOC103039144 LOC108423784,LOC108277316 coding upstream 886877 28411012 ~ 28570105 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 1415456 28939591 ~ 28949916 (-)
G179572 hyou1,LOC107588517 non-coding downstream 15154 27505695 ~ 27507977 (-)
G179528 NA non-coding downstream 507165 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 512313 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 634046 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 643708 26877576 ~ 26879423 (-)
G179596 NA non-coding upstream 138852 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 142624 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 163991 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 388695 27912830 ~ 27964374 (-)
G179669 NA non-coding upstream 863837 28387972 ~ 28389380 (-)
ift46 ift46 other downstream 45153 27470086 ~ 27477978 (-)
G179569 NA other downstream 79815 27440231 ~ 27443316 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1658657 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 2050887 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 2220048 25293675 ~ 25303083 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 193 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 37710 27561845 ~ 27566692 (-)
G179816 NA other upstream 1326555 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 3422811 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 4370067 31894202 ~ 32071924 (-)

Expression


Co-expression Network