G179569


Basic Information

Item Value
gene id G179569
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27440231 ~ 27443316 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243326
GGAAGACGCAAAGTTTTCACCTGACAGCTCTGATATGCTACACCAACACGATTACTGCCAgtattaaataaactgaaggACAAAATTGTGTcgatatattttattcatgtggaaAAAGCACAGAAATTCATTGCATCCCATTTTCCAGTGTACGCCATGCTTACGGATCTTTGTCTTCCGAGGATAATAACGTTACACAATAGCATTCTCTCACCATCCTCACGTCCTCAGTCATCCACCGAGAAGATGACATCCACAAAAGTGGGAAGACAGAgcgttaaaaaaacacacttgtttttttttttttaaggcaagtGGTGGTGACCAATACGTCAGCAGGCCTCTTgccccacacacacttctctcacAACGAACTCAGTACTACAGTTTCCTGGAATTAGTGCTTTCGCAGTTCTTATAAACGTCAGCTGTGGGAATGTACTCATGTCTTCATTGcgtgtagataaaaaaaatacagggcgTATGTATGGGGAAGCAAGCTACTTACACAGCATGATTCAGTTCGCAGAGATTTATGCAGTGCATGCATGCATTGTAaacaggtttgtgtgtgtgtgcatgtgtgtaagtATGtcagggaaaaaaacaaaacaaaaaaaacttgtaagCAGCGTAACGGGCCAGCTTCATGACCTCAGCCTGCTTAGATTTAGATCTTATCTCATTTCtgcacactttttaaaatgtaagtgtaatacaaatggttctttgatTGATTCCATTAAAGAAGAACCACTTTAGGTGTTTTTAAAGAAGATGTGAGTGTGTAGAATTTTTTTAGGAGACTAAAGAGACTCATTTCTAATTTTAAAGTTGATGTAAAGGATGGTTCTTCtatggcatcgcTCAAGGAACCATTTAAAGCTCCtttattttttggcattttaACAGTTTCTCACAAAAGTGAACTCACCTCTCACATTTATGTAAACGTCAACAGCTGTATGTTGAATTATTTTAAGGGCACAGCaagtttacactgttatattgTAGCTgaacactgactactttacactgtatcaaacTGTTGTATCATCAGTGTTgccccatgaaaagatataataaaatatttacaaaaatgtgaggggtcTACTTGTGTTAGAAGGCGGTTACACATTTTTGAGTGGCTTTGGGCCCAGTATTTGATGAcacttaattaaactaaatTCCAAAAGTTGGTGCGTTACATTAAATTCtaatttaaatttgatttattattatataacagtAACAGCATTCTGTATGGGGGTTCTTATCCTGTTGGGAAGGAAGGCAGTAATGATTTGGGGGGAGATCTAGATCAAGGCTGCCCAAAATGGCTTAAAGAACCAACATGAATGTTTCCTTAtctgtaaaggaaaaaataaaaaattataaccaGAAACATAATGGTTTAGAActaaatagcattaaaataaGCACTGTATTTACCAAAGAACCCTGGAAGAACCATTTTTAAGGATTTGGTAAGTTTAATTTACTGATTTTCTTTgtataatgcatttaaaatgtacataaaaaaagcatcaagatgtagtgtaatgtaagatattttttacttttaaatgtagtttagaATATACTTTTCTAagtatattgtgtattgttttgtctttttggcCTTTTCCCTTCTGAAGACAAAGTATTTGGGCATCTTTGATCTGGATTCAACTCCAATCAACCCTTTATAAGAATTCGCTTTGAGAACTGGGTTCAGTCTAGACACTATAAATCTGGCTCAGATGTCAGATTACAGAAAAATGTATTGGTCACCACACTGCATTCCCTaccacacgcgcacacacactcacactgaaacacattcattcattcactcaaaaacacacagatcagacACAGGCATTCCCTTGCTGAAAACCAGGGGCCACAGGAAACACAACATCCCCACCGGCGCCGGTACTACATCTACCACAAGACTATATCTTACAGCagtaaaatcagttttttttttccaaaagtagttttttttttaaacaaagttatacattatctttataaatatttctgtgcTGTTGTGCCCTCTAtcaatataaatagcaaaatatagTGTCATATTTCCTATACCCAGTTGTATCCCTTTTACAGTTTACACTAATTAAAGCATCTGTTGACTTGTTCTGAAAGTTCTGTTTTAGAAACGTAGCTACATGTACAGTTTAACAATTTCAAACTAGAAATCTTTAAGGAGACGCTCGAATGGCGCGGGGAAATGGCgatgagggggaaaaaataataaatacgaAAGCAATGTCTGAATAAtaggagagagatggagtgtgACGAGGGGAAGTGCATAGATCCCAGAGCGGGTGAGATGTGGAGCGCTGtggagtgaaaaagagagagcgaaagagagagagagagagggagggagggaaacgCAGACCTGCAGGGGCAGGGCAAGCTGATATCGTTAGGACGATTTCCTCTGGGAGGCTGCGGCGGTGTAAAACTCCTCCATCTTGCGGTGTCCTGACCTGCGTGCTCCGTCCTTCCCTGTCGGAAAATTCCAGCCGAAAATGAGCCGCGCACGGAAACAAGCCGAAGTTCCTCAACGCGCTGGATGGATTATTTTCTCGATTCGTAAAACTACTAAACcaataaatatacaaacagTCCTTTTTATCGAGGCCAAAAATGTTTCCAACACTTTGTGGTGTACATTCAGGAACATTCatattgaaagtgaaaaacaaaacagacataaacaaacaaacaataaaacaaaacgaaaaaataaaagagtctTCACTATAATtatcaataataaacattacCATAATAATTTATCATATGTTACAAATTATGCctatgtgttgtttttgttgtatttttgttgttttttttttggttcttttttgttgtttttttttcttgcagtccAAGGTCCCTGGCAGGGCAGTGTATTCCTTATAGCTTCTCTTTGGAGGGAATCCAGATATAAGGTCCAGACTGCTCCTCTATCACCATCTTACATTGAGTGTAAAtgtcctccaatgtgtctgctTGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243326 True 3054 TUCP 0.37 2 27440231 27443316

Neighbor

gene id symbol gene type direction distance location
tmem126a NA coding downstream 448598 26988617 ~ 26991633 (-)
LOC103028079 arrb2,LOC100335038,LOC106567894,LOC105023937,LOC101076921 coding downstream 500308 26927169 ~ 26939923 (-)
med11 med11,LOC107720680,LOC107676028 coding downstream 520388 26916334 ~ 26919843 (-)
LOC103027750 zgc:103508,cssa04h17orf49,LOC108424543,LOC107720679,LOC107742347,LOC107702799 coding downstream 527408 26909211 ~ 26912823 (-)
LOC103023750 LOC108424450 coding downstream 614375 26822739 ~ 26825856 (-)
LOC103044875 NA coding upstream 4035 27447351 ~ 27466674 (-)
LOC103045184 NA coding upstream 20723 27464039 ~ 27464863 (-)
vps11 vps11,LOC107691631,LOC107744603 coding upstream 37343 27480659 ~ 27493366 (-)
LOC103027279 NA coding upstream 67815 27511131 ~ 27518562 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding upstream 85344 27528660 ~ 27539710 (-)
G179528 NA non-coding downstream 424265 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 429413 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 551146 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 560808 26877576 ~ 26879423 (-)
G179475 NA non-coding downstream 565668 26872578 ~ 26874563 (-)
G179572 hyou1,LOC107588517 non-coding upstream 62379 27505695 ~ 27507977 (-)
G179596 NA non-coding upstream 219671 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 223443 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 244810 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 469514 27912830 ~ 27964374 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1575757 25656255 ~ 25864474 (-)
LOC103043022 LOC108410630,LOC107556853 other downstream 1967987 25363932 ~ 25472244 (-)
thsd1 thsd1 other downstream 2137148 25293675 ~ 25303083 (-)
LOC103025094 zgc:171929,LOC107690845,LOC107575147,LOC107671611,LOC105905449 other downstream 2232845 25203325 ~ 25207386 (-)
G178982 hint1,LOC107665476 other downstream 2306075 25130982 ~ 25134156 (-)
ift46 ift46 other upstream 26770 27470086 ~ 27477978 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other upstream 79815 27523131 ~ 27524135 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 81012 27524328 ~ 27525388 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other upstream 118529 27561845 ~ 27566692 (-)
G179816 NA other upstream 1407374 28850690 ~ 28851105 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G859035 NA non-coding NC_048574.1 CM023228.2 15993303 ~ 16047932 (-)