G179578 (LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586)


Basic Information

Item Value
gene id G179578
gene name LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 27561845 ~ 27566692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243338
AGTGAGTTTAGAATTCTGTAAAATTTTACTCCAAATACAATCATCCTCACTGTTATGTTACCTCAGCCTGATGAGTAAAGCAAGTAAAAAACATAGGCAAAGACATGACAACAGAATGGGAAGAGGTCAATTTATTCATGTTTTCCCTCAAGGCAAGAAACAAGGCAGTTGCAAAAAGGCTTGTGAAATTGTCGATAAATAAACTATGGAACATTCAAGTACAAAAATCTGTTCCCTGTTGTGGAAGTGACCCTTTAAtccccttttttctgcagtcaCTCTGCAGCAGAATCCCAGCCAAAAACTAAGCACCATAACCGAGAGTCTAACAGGAATTCTGCTACAGAGGGTTAGAACAGTAAACATTGCTGTGGAGGTAGAGCAGGTTTGGAATGGCTTAATCAACCTCCTCAATGGTTGGTCCAGAAGATCCACCACCACCAGGTGCAGCACCAGCTCCTGGGAAGCCACCAGGCATACCATCAGGCATTCCACCAGGCATGCCTCCGGCACTCTGGTACAGTTTGGTGATGATTGGGTTGCAGACCTTCTCCAGCTCCTTTTGTTGGTGCTCAAACTCGTCTCTCTCAGCCGTGATTTTTGTCAAGCCAGCTGATCACTTCGTTGCATTTGTCCATGATCTTCTGCTTGTCCTCATCACTGATCTTGCCCTTCAGTTTCTCATCCTCAACTGTTGACTTCATGTTGAAGGCATAAGACTCCAGGCTGTTCTTGGAAGACACCTTGTCACGCTGTACATCATCTTCTGCCTTGTACTTCTCTGCCTCCTGCACCATGCGCTCAATGTCCTCCTTGCTGAGACGGCCTGTTAATCAAGGGGAGAAGAGAATTAAATTAACAatgctaaaatgtaaaaataaaaataattacagcGCATCATCCATTTGCCTACCCTTGTCGTTGGTGATTGTGATCTTGTTCTCTTTGCCAGTGCTCTTGTCAGCAGCAGACACATTCATGATGCCGTTGGCATCAATGTCAAAGGTGACCTCAATCTGGGGAACACCACGAGGAGCAGGGGGGATTCCAGTCAACTCAAACTTGCCCAGAAGGTTGTTGTCCTTGGTCATGGCACGCTCACCCTCATACACCTAAAATAAACTAGATGTTAAAATTTGTTTgcaaaaaagtttgttttaagTCAGGTTAAAATCGCTCAGACATCCAAGGAAGGTGCTTGGGCCATCTTTGGTCTTTCGACCTCTGGTGGAAACTACGAATGGCAGGAATAAACTTCATCACAGCGAATGTCAAACAAGTTACCAAGCTGAAGACATTCTCACCTGAATCAGCACACCAGGCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTCTGCTTGGTTGGGATTGTTGTGTTACGTTTGATTAGAACGGTCATGACTCCACCAGCTGTCTCAATACCAAGAGACAGAGGGgtgacatccagcagcagcaggtccTGGACATTCTCTGATTTGTCTCCAGAGAGGATGGCAGCCTGGACAGCTGAAATGTAACAGTTACAGGTTAGAAAAGCCTTCATATTtgataaatgtgattttaatttaattagtcGCTCAGACATCCAAGGAAGGTGCTTGGGCCATCTTTGGTTTTACAACCTCTGGTGGAAACTACGAATGGCAGGAATAAACTTCATCACAGCAACATCACaatgataaaataaagtttgCTACAACAAACCTGCGCCATAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTCAGTTCTTTGCCGTTGAAGAAGTCTTGCAGGAGCTTCTGGATCTTAGGGATACGAGTGGAACCACCAACCAGGACAATGTCATGGATCTGAGCCTTGTCCATTTTGGCATCACGGAGAGACTTCTCAACTGGGTCCAAGGTACCACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATTGAGGTATAGAAATCAACACCCTCATAAAGGGAGTCGATCTCAATGCTGGCCTGAGTGCTGGAGGACAGGGTGCGCTTAGCGCGCTCGCAGGCAGTACGCAGACGACGGACAGCCCTCTTGTTGTCGCTGATGTCCTTCTTGTGCTTGCGCTTGAACTCTGTAATAAAGTGGTTGACCATACGGTTGTCGAAGTCTTCTCCGCCCAAGTGAGTGTCACCAGCGGTGGATTTGACCTCAAAGATACCATCTTCAATGGTCAAGATGGACACATCGAAGGTGCCACCGCCAAGATCAAAAATGAGGACATTCCTCTCTGAACCAACCTATATGAAGAGACAGGTGAAGGGGGGGGGTTTCATGAATTACGTAACACCcatcaaataaatttaatttaagaagCTGCATTTATTCGCTCAGACATCCAAGGAAGGTAATTGTGCCATCTTTGGTTTTTCAACCTCTGGTGGAAACTACGAATGGCAGGAAAAGACTTCATCATAGCGCAAGATTAACATTTTGCTCTTCAAGTAAGGGGAGAGTTGACTGCCAACCGCTGTTATTGGCAAAGCAGTCTTAACAGTACAAATACTAACCTTTTTGTCCAGACCATAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACATTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAGGCAGGCACTGTGATCACAGCATTTGTGACGGTCTTCCAAGATAGGCCTCAGCAATTTCCTTCATTTTGACAAGCACCATGGATGAAATTTCCTCAGGGTAGAAGCTCTTGGCCTCGCCTTTGTAATCAACCTGGACTTTGGGGCGGGTGCTGTCGTTTATTACAGTGAAAGGCCAGTGCTTCATGTCAGACTGGACAACTCCATCATCAAACCTTCGGCCAATCAGTCTTTTGGCAtctgtaaaattaaagatagATTTAATTACATAACAGTATAGGTGCCCAACACAACTTCAGTTGCTCATTTTGTTCGCTCAGACATCCAAGGAAGGTGCTTGGGCCATCTCTGGTCTTTCAACCTCTGGTGGAAACTACGAATGGCAGGAATAAACTTCATCACAGCGAAACTCAGTACATGAAATCTTaaaatagaagttaaagtaaTTTTCTACTAAACACAAACAGTGAAAACTCCACTAACCAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAATAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAATACCGACAGCTGGTCCTTTAGACATGGTTTCtgttaaagcaaaataaataaatcagtaaacttataattaaaaagggggaaaaaaatccttacaaataaagtaaatgg
>TU243339
AGTGAGTTTAGAATTCTGTAAAATTTTACTCCAAATACAATCATCCTCACTGTTATGTTACCTCAGCCTGATGAGTAAAGCAAGTAAAAAACATAGGCAAAGACATGACAACAGAATGGGAAGAGGTCAATTTATTCATGTTTTCCCTCAAGGCAAGAAACAAGGCAGTTGCAAAAAGGCTTGTGAAATTGTCGATAAATAAACTATGGAACATTCAAGTACAAAAATCTGTTCCCTGTTGTGGAAGTGACCCTTTAAtccccttttttctgcagtcaCTCTGCAGCAGAATCCCAGCCAAAAACTAAGCACCATAACCGAGAGTCTAACAGGAATTCTGCTACAGAGGGTTAGAACAGTAAACATTGCTGTGGAGGTAGAGCAGGTTTGGAATGGCTTAATCAACCTCCTCAATGGTTGGTCCAGAAGATCCACCACCACCAGGTGCAGCACCAGCTCCTGGGAAGCCACCAGGCATACCATCAGGCATTCCACCAGGCATGCCTCCGGCACTCTGGTACAGTTTGGTGATGATTGGGTTGCAGACCTTCTCCAGCTCCTTTTGTTGGTGCTCAAACTCGTCTCTCTCAGCCGTGATTTTTGTCAAGCCAGCTGATCACTTCGTTGCATTTGTCCATGATCTTCTGCTTGTCCTCATCACTGATCTTGCCCTTCAGTTTCTCATCCTCAACTGTTGACTTCATGTTGAAGGCATAAGACTCCAGGCTGTTCTTGGAAGACACCTTGTCACGCTGTACATCATCTTCTGCCTTGTACTTCTCTGCCTCCTGCACCATGCGCTCAATGTCCTCCTTGCTGAGACGGCCTGTTAATCAAGGGGAGAAGAGAATTAAATTAACAatgctaaaatgtaaaaataaaaataattacagcGCATCATCCATTTGCCTACCCTTGTCGTTGGTGATTGTGATCTTGTTCTCTTTGCCAGTGCTCTTGTCAGCAGCAGACACATTCATGATGCCGTTGGCATCAATGTCAAAGGTGACCTCAATCTGGGGAACACCACGAGGAGCAGGGGGGATTCCAGTCAACTCAAACTTGCCCAGAAGGTTGTTGTCCTTGGTCATGGCACGCTCACCCTCATACACCTAAAATAAACTAGATGTTAAAATTTGTTTgcaaaaaagtttgttttaagTCAGGTTAAAATCGCTCAGACATCCAAGGAAGGTGCTTGGGCCATCTTTGGTCTTTCGACCTCTGGTGGAAACTACGAATGGCAGGAATAAACTTCATCACAGCGAATGTCAAACAAGTTACCAAGCTGAAGACATTCTCACCTGAATCAGCACACCAGGCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTCTGCTTGGTTGGGATTGTTGTGTTACGTTTGATTAGAACGGTCATGACTCCACCAGCTGTCTCAATACCAAGAGACAGAGGGgtgacatccagcagcagcaggtccTGGACATTCTCTGATTTGTCTCCAGAGAGGATGGCAGCCTGGACAGCTGAAATGTAACAGTTACAGGTTAGAAAAGCCTTCATATTtgataaatgtgattttaatttaattagtcGCTCAGACATCCAAGGAAGGTGCTTGGGCCATCTTTGGTTTTACAACCTCTGGTGGAAACTACGAATGGCAGGAATAAACTTCATCACAGCAACATCACaatgataaaataaagtttgCTACAACAAACCTGCGCCATAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTCAGTTCTTTGCCGTTGAAGAAGTCTTGCAGGAGCTTCTGGATCTTAGGGATACGAGTGGAACCACCAACCAGGACAATGTCATGGATCTGAGCCTTGTCCATTTTGGCATCACGGAGAGACTTCTCAACTGGGTCCAAGGTACCACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATTGAGGTATAGAAATCAACACCCTCATAAAGGGAGTCGATCTCAATGCTGGCCTGAGTGCTGGAGGACAGGGTGCGCTTAGCGCGCTCGCAGGCAGTACGCAGACGACGGACAGCCCTCTTGTTGTCGCTGATGTCCTTCTTGTGCTTGCGCTTGAACTCTGTAATAAAGTGGTTGACCATACGGTTGTCGAAGTCTTCTCCGCCCAAGTGAGTGTCACCAGCGGTGGATTTGACCTCAAAGATACCATCTTCAATGGTCAAGATGGACACATCGAAGGTGCCACCGCCAAGATCAAAAATGAGGACATTCCTCTCTGAACCAACCTTTTGTCCAGACCATAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACATTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAGGCAGGCACTGTGATCACAGCATTTGTGACGGTCTGCAAGAGAAGTCATGGATGTAGGGAGTCCATTCATAAGCAAGCAACAACTTAaataaaactgatcagttacAAAAGCATCCAGCTTCACTTAGAGAATACCTTACCTTTCCAAGATAGGCCTCAGCAATTTCCTTCATTTTGACAAGCACCATGGATGAAATTTCCTCAGGGTAGAAGCTCTTGGCCTCGCCTTTGTAATCAACCTGGACTTTGGGGCGGGTGCTGTCGTTTATTACAGTGAAAGGCCAGTGCTTCATGTCAGACTGGACAACTCCATCATCAAACCTTCGGCCAATCAGTCTTTTGGCAtTGGTTCTTGGCTGCATCACCAATCAGTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAATAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAATACCGACAGCTGGTCCTTTAGACATGGTTTCtgttaaagcaaaataaataaatcagtaaacttataattaaaaagggggaaaaaaatccttacaaataaagtaaatgg
>TU243342
AGTGAGTTTAGAATTCTGTAAAATTTTACTCCAAATACAATCATCCTCACTGTTATGTTACCTCAGCCTGATGAGTAAAGCAAGTAAAAAACATAGGCAAAGACATGACAACAGAATGGGAAGAGGTCAATTTATTCATGTTTTCCCTCAAGGCAAGAAACAAGGCAGTTGCAAAAAGGCTTGTGAAATTGTCGATAAATAAACTATGGAACATTCAAGTACAAAAATCTGTTCCCTGTTGTGGAAGTGACCCTTTAAtccccttttttctgcagtcaCTCTGCAGCAGAATCCCAGCCAAAAACTAAGCACCATAACCGAGAGTCTAACAGGAATTCTGCTACAGAGGGTTAGAACAGTAAACATTGCTGTGGAGGTAGAGCAGGTTTGGAATGGCTTAATCAACCTCCTCAATGGTTGGTCCAGAAGATCCACCACCACCAGGTGCAGCACCAGCTCCTGGGAAGCCACCAGGCATACCATCAGGCATTCCACCAGGCATGCCTCCGGCACTCTGGTACAGTTTGGTGATGATTGGGTTGCAGACCTTCTCCAGCTCCTTTTGTTGGTGCTCAAACTCGTCTCTCTCAGCCGTCTAGGGAACAAGACCAAGGCAAGAACCAATCAATTATTTTCCACATAGTTTACCCTCTGTTGCAAACATTGACTAACTGCACCAGACTTGATTGAGAGAAggggaggaaaaaataaataaaaataataaaaaaaactatacccCATAGGCACTTACTACCCACAGTACATTAATTTTCATTATAATTACCTGATTTTTGTCAAGCCAGCTGATCACTTCGTTGCATTTGTCCATGATCTTCTGCTTGTCCTCATCACTGATCTTGCCCTTCAGTTTCTCATCCTCAACTGTTGACTTCATGTTGAAGGCATAAGACTCCAGGCTGTTCTTGGAAGACACCTTGTCACGCTGTACATCATCTTCTGCCTTGTACTTCTCTGCCTCCTGCACCATGCGCTCAATGTCCTCCTTGCTGAGACGGCCTGTTAATCAAGGGGAGAAGAGAATTAAATTAACAatgctaaaatgtaaaaataaaaataattacagcGCATCATCCATTTGCCTACCCTTGTCGTTGGTGATTGTGATCTTGTTCTCTTTGCCAGTGCTCTTGTCAGCAGCAGACACATTCATGATGCCGTTGGCATCAATGTCAAAGGTGACCTCAATCTGGGGAACACCACGAGGAGCAGGGGGGATTCCAGTCAACTCAAACTTGCCCAGAAGGTTGTTGTCCTTGGTCATGGCACGCTCACCCTCATACACCTAAAATAAACTAGATGTTAAAATTTGTTTgcaaaaaagtttgttttaagTCAGGTTAAAATCGCTCAGACATCCAAGGAAGGTGCTTGGGCCATCTTTGGTCTTTCGACCTCTGGTGGAAACTACGAATGGCAGGAATAAACTTCATCACAGCGAATGTCAAACAAGTTACCAAGCTGAAGACATTCTCACCTGAATCAGCACACCAGGCTGGTTGTCTGAATAGGTGGTGAAGGTCTGGGTCTGCTTGGTTGGGATTGTTGTGTTACGTTTGATTAGAACGGTCATGACTCCACCAGCTGTCTCAATACCAAGAGACAGAGGGgtgacatccagcagcagcaggtccTGGACATTCTCTGATTTGTCTCCAGAGAGGATGGCAGCCTGGACAGTGCGCCATAAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTCAGTTCTTTGCCGTTGAAGAAGTCTTGCAGGAGCTTCTGGATCTTAGGGATACGAGTGGAACCACCAACCAGGACAATGTCATGGATCTGAGCCTTGTCCATTTTGGCATCACGGAGAGACTTCTCAACTGGGTCCAAGGTACCACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGAGCCCTGGTGATTGAGGTATAGAAATCAACACCCTCATAAAGGGAGTCGATCTCAATGCTGGCCTGAGTGCTGGAGGACAGGGTGCGCTTAGCGCGCTCGCAGGCAGTACGCAGACGACGGACAGCCCTCTTGTTGTCGCTGATGTCCTTCTTGTGCTTGCGCTTGAACTCTGTAATAAAGTGGTTGACCATACGGTTGTCGAAGTCTTCTCCGCCCAAGTGAGTGTCACCAGCGGTGGATTTGACCTCAAAGATACCATCTTCAATGGTCAAGATGGACACATCGAAGGTGCCACCGCCAAGATCAAAAATGAGGACATTCCTCTCTGAACCAACCTTTTTTGTCCAGACCATAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACATTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAGGCAGGCACTGTGATCACAGCATTTGTGACGGTCTGCAAGAGAAGTCATGGATGTAGGGAGTCCATTCATAAGCAAGCAACAACTTAaataaaactgatcagttacAAAAGCATCCAGCTTCACTTAGAGAATACCTTACCTTTCCAAGATAGGCCTCAGCAATTTCCTTCATTTTGACAAGCACCATGGATGAAATTTCCTCAGGGTAGAAGCTCTTGGCCTCGCCTTTGTAATCAACCTGGACTTTGGGGCGGGTGCTGTCGTTTATTACAGTGAAAGGCCAGTGCTTCATGTCAGACTGGACAACTCCATCATCAAACCTTCGGCCAATCAGTCTTTTGGCAtCAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAATAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAATACCGACAGCTGGTCCTTTAGACATGGTTTCAAATGATTTGAACAGAGACAGATGAAGACTGGAGTTGTCGTGAGGCGGTGCCTGCCGTACCTCGCTGCTGCAGAGAGAACAAGCGAATGTTCTAGAACATCTATATATTGCCGGTAATCCAACC

Function

NR:

description
PREDICTED: heat shock cognate 71 kDa protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243338 True 3420 TUCP 0.45 3 27562974 27566692
TU243339 False 2982 TUCP 0.46 4 27562974 27566692
TU243342 False 3055 lncRNA 0.46 5 27561845 27566692

Neighbor

gene id symbol gene type direction distance location
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 22135 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 43283 27511131 ~ 27518562 (-)
vps11 vps11,LOC107691631,LOC107744603 coding downstream 68479 27480659 ~ 27493366 (-)
LOC103044875 NA coding downstream 95171 27447351 ~ 27466674 (-)
LOC103045184 NA coding downstream 96982 27464039 ~ 27464863 (-)
bsx bsx,LOC107747047 coding upstream 24879 27591571 ~ 27594524 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding upstream 33400 27600092 ~ 27606283 (-)
LOC103039144 LOC108423784,LOC108277316 coding upstream 844320 28411012 ~ 28570105 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 1372899 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 1387347 28954039 ~ 28998439 (-)
G179572 hyou1,LOC107588517 non-coding downstream 53868 27505695 ~ 27507977 (-)
G179528 NA non-coding downstream 545879 27015745 ~ 27015966 (-)
G179524 NA non-coding downstream 551027 27010524 ~ 27010818 (-)
G179490 NA non-coding downstream 672760 26884446 ~ 26889085 (-)
G179487 LOC108424537 non-coding downstream 682422 26877576 ~ 26879423 (-)
G179596 NA non-coding upstream 96295 27662987 ~ 27663294 (-)
G179597 NA non-coding upstream 100067 27666759 ~ 27667611 (-)
G179642 NA non-coding upstream 121434 27688126 ~ 27691388 (-)
G179651 NA non-coding upstream 346138 27912830 ~ 27964374 (-)
G179669 NA non-coding upstream 821280 28387972 ~ 28389380 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 36457 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 37710 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 83867 27470086 ~ 27477978 (-)
G179569 NA other downstream 118529 27440231 ~ 27443316 (-)
LOC103047293 LOC108410718,LOC106581537 other downstream 1697371 25656255 ~ 25864474 (-)
G179816 NA other upstream 1283998 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 3380254 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 4327510 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 4673487 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 4869633 32436325 ~ 32584343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location