G179638


Basic Information

Item Value
gene id G179638
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28382961 ~ 28384209 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243415
ttgtgtataatgttaccagtcaggtattaaacgGGTATTATTAAGCTACTCCGCTATTCctttgttcagaggtgaatattatctgcctgtagcctgctgctaaccccggctagcactcttggagcagcattagcattatccgcgaactagctagctctttcactgctacatgggacaaaccgctagctaatatcactctgGCTTACCAAAgcactcaggattcctcagtgtagcgctgtcggacggcattagcggctaatgctaatgccccAGCCTTGGTACTAGAGAAATtggggaatctaagcttactgtatataaacggaagcattttactcacccaaataaacagtttgtcaggagagaaatcgctgtagattaacatccagtgtttgtttgactttaaaagaaagtatttttgttCACttggcttagctttacttaacttagttagctacagGCAGGGAGACctgctgcaTTAGAATTAGAAGTGCCTTAT

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU243415 True 496 lncRNA 0.43 2 28382961 28384209

Neighbor

gene id symbol gene type direction distance location
c20h11orf63 NA coding upstream 759296 27567728 ~ 27623665 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding upstream 816385 27561863 ~ 27566576 (+)
crtam NA coding upstream 822393 27554202 ~ 27560568 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding upstream 872515 27496115 ~ 27510446 (+)
LOC103046108 dlg2,LOC107747009 coding upstream 939730 26993596 ~ 27443231 (+)
tmem218 tmem218 coding downstream 706412 29090621 ~ 29098792 (+)
robo4 robo4 coding downstream 724099 29108308 ~ 29148810 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding downstream 1031614 29415823 ~ 29421907 (+)
esam NA coding downstream 1044682 29428891 ~ 29503168 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding downstream 1125889 29510098 ~ 29516946 (+)
G179370 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924 non-coding upstream 858852 27523186 ~ 27524109 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 889620 27492691 ~ 27493341 (+)
G179433 ift46,ck060 non-coding upstream 910240 27470120 ~ 27472721 (+)
G179432 NA non-coding upstream 913011 27469717 ~ 27469950 (+)
G179428 NA non-coding upstream 916602 27449402 ~ 27466359 (+)
G179599 NA non-coding downstream 5556 28389765 ~ 28478787 (+)
G179639 NA non-coding downstream 105118 28489327 ~ 28489645 (+)
G179735 NA non-coding downstream 228946 28613155 ~ 28613473 (+)
G179745 NA non-coding downstream 244555 28628764 ~ 28628999 (+)
G179776 NA non-coding downstream 348912 28733121 ~ 28804707 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 857520 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 1466617 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 1503878 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 3125492 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 3928339 24447792 ~ 24454622 (+)
G180235 erg other downstream 2755135 31139344 ~ 31151095 (+)
G180266 NA other downstream 3048989 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 3880789 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 4666033 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 5788715 34172924 ~ 34328970 (+)

Expression


Co-expression Network