G179639


Basic Information

Item Value
gene id G179639
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28489327 ~ 28489645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243416
tatatatcaaatcaaatcaaatcaaatttatttgtatagcgctttttacaacaggtgttggcacaaagcagctttacagaaacatgattacaggacaaagaatcaggcaaaacattaaacatagaaaatacagaatacagaacccccagtgagcgcggaggcaaggaaaaactccctcagagctgcaggaggaggaagaagccttgggaggaccaagactcacatttgaggggggaccatcctaccactggtcaaacggcttttaaattaaaatttaaaaagtcttttatacatccacataggttttatatattcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243416 True 319 lncRNA 0.39 1 28489327 28489645

Neighbor

gene id symbol gene type direction distance location
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding upstream 104232 27672949 ~ 28385095 (+)
c20h11orf63 NA coding upstream 865662 27567728 ~ 27623665 (+)
LOC103043364 LOC107691633,LOC107751398,LOC108423781,LOC107693988,LOC107597532 coding upstream 922751 27561863 ~ 27566576 (+)
crtam NA coding upstream 928759 27554202 ~ 27560568 (+)
hyou1 hyou1,LOC107577052,LOC107691632 coding upstream 978881 27496115 ~ 27510446 (+)
tmem218 tmem218 coding downstream 600976 29090621 ~ 29098792 (+)
robo4 robo4 coding downstream 618663 29108308 ~ 29148810 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding downstream 926178 29415823 ~ 29421907 (+)
esam NA coding downstream 939246 29428891 ~ 29503168 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding downstream 1020453 29510098 ~ 29516946 (+)
G179599 NA non-coding upstream 10540 28389765 ~ 28478787 (+)
G179638 NA non-coding upstream 105118 28382961 ~ 28384209 (+)
G179370 zgc:194989,hist2h2l,LOC107719244,LOC108277172,LOC107574861,LOC105900366,LOC103356012,LOC107667924 non-coding upstream 965218 27523186 ~ 27524109 (+)
G179441 vps11,LOC107588528,LOC107578557,LOC107691631 non-coding upstream 995986 27492691 ~ 27493341 (+)
G179433 ift46,ck060 non-coding upstream 1016606 27470120 ~ 27472721 (+)
G179735 NA non-coding downstream 123510 28613155 ~ 28613473 (+)
G179745 NA non-coding downstream 139119 28628764 ~ 28628999 (+)
G179776 NA non-coding downstream 243476 28733121 ~ 28804707 (+)
G179819 NA non-coding downstream 422530 28912175 ~ 28912453 (+)
G179820 NA non-coding downstream 425688 28915333 ~ 28933140 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 963886 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 1572983 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 1610244 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 3231858 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 4034705 24447792 ~ 24454622 (+)
G180235 erg other downstream 2649699 31139344 ~ 31151095 (+)
G180266 NA other downstream 2943553 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 3775353 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 4560597 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 5683279 34172924 ~ 34328970 (+)

Expression


Co-expression Network