G179694


Basic Information

Item Value
gene id G179694
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28521035 ~ 28521289 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243472
ggaaacAGATCTGCTTGTTCGTTCTgtgtattgttgatgtaaaagtttgcatagctgttAAGAGGCATGCACTATtcgtttgtgcactgctgcattagaCAATTccctgccaagatagcaatgttAAACATCTGTTttctattgccaagatagcaatacgccagaaatgtacctgaacacacctcattttgagACCACCCTGCCCTTTGtagtagatacagtatattcacaAGCAACTTAtctatttaacccttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243472 True 255 lncRNA 0.40 1 28521035 28521289

Neighbor

gene id symbol gene type direction distance location
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 914752 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 926511 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 981325 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 1002473 27511131 ~ 27518562 (-)
vps11 vps11,LOC107691631,LOC107744603 coding downstream 1027669 27480659 ~ 27493366 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 418302 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 432750 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 637751 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 1051365 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1757807 30279096 ~ 30419086 (-)
G179671 NA non-coding downstream 127021 28393784 ~ 28394014 (-)
G179669 NA non-coding downstream 131655 28387972 ~ 28389380 (-)
G179651 NA non-coding downstream 556661 27912830 ~ 27964374 (-)
G179642 NA non-coding downstream 829647 27688126 ~ 27691388 (-)
G179597 NA non-coding downstream 853424 27666759 ~ 27667611 (-)
G179698 NA non-coding upstream 4885 28526174 ~ 28526606 (-)
G179699 NA non-coding upstream 6051 28527340 ~ 28527755 (-)
G179718 NA non-coding upstream 60748 28582037 ~ 28582269 (-)
G179737 NA non-coding upstream 92919 28614208 ~ 28614435 (-)
G179762 NA non-coding upstream 128588 28649877 ~ 28650659 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 954343 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 995647 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 996900 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1043057 27470086 ~ 27477978 (-)
G179569 NA other downstream 1077719 27440231 ~ 27443316 (-)
G179816 NA other upstream 329401 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 2425657 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 3372913 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3718890 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3915036 32436325 ~ 32584343 (-)

Expression


Co-expression Network