G179762


Basic Information

Item Value
gene id G179762
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28649877 ~ 28650659 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243541
aattgttctattattttttacatgactgttcctgtatttttttattatttattttgttatgttgcacattgctgttttaatagtgcacactgctgctaccaaaaaaaagccactagatggcattacatatatcttaattgaataatttaaatttgaccattagtgcctaatgtggtgtattacagatcacttgtatcactttgcatcacttatatcaagcgcaccttttgaaataagatattgtaaatttgatgaatcaaaccaatgactgaccatagactaatctaaaactggcataggcctctctgctgtaaaaaaaagaaaaaagaaaatcaagaatagaatcgaatcgtgaccctaaaatcggaaataaaatcgaatcgaggatttagagaatcgtgacacccctagacAGTTTACATATTGAGGATATCACTGCTTTAACAGCACTGTtccaactgtacatttcattacagagagtgtcaaaaagcatgtttaattgAATGATGTGcagaaaacatttatataaatcacTCTACTGTAATGCAATATTTTGCTCAGCTCTATCAGTGTGTGATTACATATATCATATCAATAttggaattatattgtattgaccaaaaattaagaataatattttttattcacagcAGGAGTGTGAAAGTGATCTACACTCCTCCAGACCTGTTGGGGGAGCTGAGAAACCGATATACTAATACTAGAGATTAAAAACTAGAGTTTTTGAAGCTGATTTCGATTGCCTGTTTCTGATACCGATACGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243541 True 783 lncRNA 0.32 1 28649877 28650659

Neighbor

gene id symbol gene type direction distance location
LOC103039144 LOC108423784,LOC108277316 coding downstream 79772 28411012 ~ 28570105 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 1043594 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 1055353 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 1110167 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 1131315 27511131 ~ 27518562 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 288932 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 303380 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 508381 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 921995 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1628437 30279096 ~ 30419086 (-)
G179737 NA non-coding downstream 35442 28614208 ~ 28614435 (-)
G179718 NA non-coding downstream 67608 28582037 ~ 28582269 (-)
G179699 NA non-coding downstream 122122 28527340 ~ 28527755 (-)
G179698 NA non-coding downstream 123271 28526174 ~ 28526606 (-)
G179694 NA non-coding downstream 128588 28521035 ~ 28521289 (-)
G179764 NA non-coding upstream 3012 28653671 ~ 28653888 (-)
G179766 NA non-coding upstream 3863 28654522 ~ 28654748 (-)
G179779 NA non-coding upstream 9333 28659992 ~ 28848744 (-)
G179814 NA non-coding upstream 193041 28843700 ~ 28843975 (-)
G179815 NA non-coding upstream 196460 28847119 ~ 28847478 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 1083185 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1124489 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 1125742 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1171899 27470086 ~ 27477978 (-)
G179569 NA other downstream 1206561 27440231 ~ 27443316 (-)
G179816 NA other upstream 200031 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 2296287 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 3243543 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3589520 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3785666 32436325 ~ 32584343 (-)

Expression


Co-expression Network