G179779


Basic Information

Item Value
gene id G179779
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28659992 ~ 28848744 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243559
CTGCGATACCCGCATGCGTTTCACCTCGTAGTTGAGCGCCAAGTCCGGGAGACACGGAGCTTATGGACAGTCAGTTTGGCGCTTTATCCGGGCGAGAACGCTTCACTTTAAGTGGGTTGGCGACACTTGGAGTTAATGATGGTGTGCTGCTGTGCGGTCTGCTGAAATCCGTTCTGCTGGGGAACATTAGATAAACTGACTGTGTGGTTCTACTGCGGGGGGGCTGCTGCGCGCATCCGCTGGAGATCCACCATCCACTGTAGCGGAGAAATTACCATCCAAGACAAACactagagacagagagagacagagagagagatagaggaacTGACTGTCTGTATTTCTTCTTCTATTTCACATCCACACagtcatatatatacacacacacacagcacacactcacagccTCAGACGGGCAGGCGCTGGAACCCGCTGGAAGTTTGGAGGAATCCGCAGGAGCGCGTTTTCTACAGGATTTCAGGCTCTCCTCTTTTCGGGGTGTTACGTTACTCGGACGCAGGATAATAAGCCTGGGTGTTTTTTGAGCCCTCGTACTCGGAGTACCGTATCTCAAGTTGTGGAAGtttgcgcgcgcgtgtgtgtttttgtgcgcAGCGACGGGGGAAAAACATGGGCTTAGCCGGCTGCCTCGCTCTGCCGTGGAAATGCCTGGTGGTGGTGGCGCTAAGACTGCTGTTCCTTGTGCCCGCAGGAGTGCCGGCGCGGAGCGGGGACTCGTATTTAAAGGACAACATCACGGTGAGGCAGGGGGACAGCGCCGTGCTCAA
>TU243560
cctGTAGATCCATCTCCTACAGCTTTAGCTAAAGCGGTTCAGGAGCACCAGATGCCTGCTGCTGTCACTCAGCCAGACGCCCTAGCCAATCGGTGGGCAGTGTAGGCGGGGCTTCGTCGCCTCAGCTTGTCGAGTACGCCGTGCCTGTGAAAATAATCAATGGGAACTCTCTCTCAGTGGCtgagcttctctctctccaaGTTGCGCTGGATTTTAAACGGCCACtagctctctctatctctctctctattctttctcttattctatctctctctctctcgttttttctctctctctttcttaccaAATGCTGAGCATAGGCTCCTTTCTGCAGCATTAATTACTCCactctgagaaagagagagagagtgtgtgagaagagcagcagcaggaggaggcgcgcagggagtgtgtgttgtgttgtgttggtgtgttggagtgagtgagtgtgagtgtgtgtgtggaagaagaagaagaagaagaagaagaagaagctgaagTGTGTGAAGAATGTGTAAGCCCGTGTGCTTGATCTTCGTGGCATGGCTCATCGCTCTGCTCGTCTACCCAGGAGTGCCGGCGCGGAGCGGGGACTCGTATTTAAAGGACAACATCACGGTGAGGCAGGGGGACAGCGCCGTGCTCAA

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243559 True 788 lncRNA 0.54 2 28659992 28660799
TU243560 False 647 lncRNA 0.52 2 28659992 28848744

Neighbor

gene id symbol gene type direction distance location
LOC103039144 LOC108423784,LOC108277316 coding downstream 89887 28411012 ~ 28570105 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 1053709 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 1065468 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 1120282 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 1141430 27511131 ~ 27518562 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 90847 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 105295 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 310296 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 723910 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1430352 30279096 ~ 30419086 (-)
G179766 NA non-coding downstream 5244 28654522 ~ 28654748 (-)
G179764 NA non-coding downstream 6104 28653671 ~ 28653888 (-)
G179762 NA non-coding downstream 9333 28649877 ~ 28650659 (-)
G179737 NA non-coding downstream 45557 28614208 ~ 28614435 (-)
G179718 NA non-coding downstream 77723 28582037 ~ 28582269 (-)
G179842 NA non-coding upstream 63425 28912169 ~ 28912471 (-)
G179843 NA non-coding upstream 66544 28915288 ~ 28933142 (-)
G179844 NA non-coding upstream 67938 28916682 ~ 28917062 (-)
G179845 NA non-coding upstream 102720 28951464 ~ 28951680 (-)
G179837 NA non-coding upstream 105305 28954049 ~ 29088595 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 1093300 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1134604 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 1135857 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1182014 27470086 ~ 27477978 (-)
G179569 NA other downstream 1216676 27440231 ~ 27443316 (-)
G179816 NA other upstream 1946 28850690 ~ 28851105 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 2098202 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 3045458 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3391435 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3587581 32436325 ~ 32584343 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002855 opcml coding NC_007121.7 CM002894.2 30617826 ~ 30785501 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_14834446_14835469 NA coding CI01000304 null 14834414 ~ 14835549 (-)