G179837


Basic Information

Item Value
gene id G179837
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28954049 ~ 29088595 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243619
TTCCGAACATTCATGAATTCCGTGAATTCATTGTCACGCCTAGCGCCAAAAGCACACCTATCtttcccacactcagctctacctgcgatctATGTGCGATTGCCCCGGACttaccacacactgacatcactccctcAAACAACCACATTCACACTGCACACAACGCTAACCGGAAACCAATCACCCGGTTATTGAAATCACCTGCCATACAGTTTAATACACCTCTAATCCACTCACTCATTGCTTGGAGTATTGTTTGGCTAACCCCCACTTTATGACACAGATTCATGAGTTCTTCATCTCCACCATCTCTACATGGTTCTTCAGGTGAATCCCCAGCATGACATcagttttacaaaacaaaaacttttttgGGCATGAAATTTTAGAGCAAACGACTTTGCTGGCAACCATATCCAACCTTGaagttgaaaaaaataagacttttaaaGACCTGACAGCACAACATATATCCCTTAAACTATAAAGCATTTCGCCCAGTTGCTTGATATTTATGGTTTAGGTTTTCTGTCAGCAATGTGGCTCATGGGAGGAGTCTCGTTTTTTGTCTGGAACTCTCAGATGATGCAATGCTGAAAGACACTGAAGAAGTCAGGcacactttttctctttctcaagacaaaaaaaaaaaagggaaacttGGAAAGCGTGGGCGGAGCCAACCTGGCGCACGAATCGTCTCttttaacagaataaaataaaccgGTGGCTCCTTCCAGACCACAGACTTCCTCAAGATGTTTACTGGAGAAAGCACTGCAGGAACACTGAAGAAGAAACGCAGTGCATTGATTGTACCCGATTCAAACCTGTACATCAATTGCTGTCTTTCAGTTTCTACCTGTTTTACCACTTTGGCAAGAATTGCGTTGTTGTAATGTTTTGCATGTGCAGCCGATGTACACGTTTCAATCGAGGCGACTCCAAAGCACTGTCGTTTTAAGTGAACGAACGCAATTCTACATAACTCAACGTCTTTACAGAACGTTTCAGCTGCTGgaactctctctgtctgttttctgtgaaggaCAGAAGCTGTGAAGATATCTCCATCTTTTTGTGCTAAATCAGTCTCCAAACTAAAGCACCTGTTTCTGATGTGATGTCTAGAGCTGAACAAAGCTGTTCTTGGATGTAATTGGAGTTGGTCTTTGTGAAGTATATGTTTCTCATTACCCTTTTTTCttggtgtttttgtttgtttttttttttttttatggttcttCCAGAGCAAGTGACGATAGGggagatttttattttgtttgtacaCATCGTTGTCATAATCTATTGTGTTTCAATAGAACATTTTTGATAATTAAAAGAGATGATTTTAGT
>TU243624
gagaggaaaagagggaaACGAAGGGAAGACACGGCTCCTGGAGGCGCGTTAGGATTCCTGGATGCTCTTTTGCTCCTTGAAGCTGCTGGACCTGAGAAATGTGGTCATTTTCAGAGCTCGTGGACGGGCTGTCAGAAACCagcatttgtttcttgtttgttcTTCTGATAGAGGCACGAGGGAGGCATTTCTAGCACACGGAGGCTTCTAGCATAAGGTGTTTTATTGAGGATAATTTCAGAGTGTTTGTTTAAGCTCTTAATTTGATAGCGTTTAGCTAACCGCACCaatttatagtgtgtgtgtgtgtgtgtgtgtgtaaatgagtgagtgagtgttgagctCTGTGCgctgtgaaagtgtgtgaatAAAAAGATGCTAGGCTAGCTAAGAACTGTTAAACTAACTGTTAACCCAAACAAGTTGCTCGTTTTTGCTCTTTTCTGACTTAATTGACGACTAAATAAtgctatatataaaatattatggtTAGGCTTTTTGTGGTATGTTGTTATGTGTGGGGTGTTGTTATGCgttaaccccttaacatgccttgtcccgtatacagactacaggtgtaggtgatataaaaaaccttttttctgcaataaaataacttatttacattttacaaaaagaaaagggctttgaaatctcctacaggacacttggagaagctgtctgttcactctctactccacttaactTAATAGTTCCAGAtaagtaacaggaatcaacccaaattctgcaggtttgaaaatagatgtaagaactagacaaacataacgaaaAATAAAGGTTTGAAGGACCTTTGTATTTGTATTCaggacaatattaattttaaaagaaaagaaacaggaaagagctaattttatgattttattcattatattttaacattagcagatttacttaaatatatttattcttttctattacaattacagttatgCCTTTCAGTAATATTCCATATCAATCATGAAAACTTTTTATgtaatacttaaataaaaatcctCAAGagttagtggtgtaatgtcaggcagacaaatTGACAAAAcgcctggcctgttaaggggttaaaacgTTTGGTTTACTTTTTGGACACAAATGTAGCTAGCtatagctaggttagttaactagctatcTAAGTTAAATAGCCCAGCGTTAGCTAAGTGGAACCCTTTGCTAGTCacgctaggttaactagctagttagctatctaGTTAATTAAGAAGGGTGTTGAAAAAACgtaaacacactcacataagtgttcatttagctatttttgtattgttacaTTTAGAGTAGAGTTCATAAGATTAAAACTACTAatttaaaagtcattaaaatgCTGTGCATATAGGTCACATATTATTTGCTACTTGTTcctattagtaaaaaaaaaagccgattcatagcaattttttttttactatttgttttcttgtttgtcTGTAATAAACCGTTTCTCTAAGATTTAAGAAACCTAATTTTATCTACTAAATCTGCTGAGAGTGTCCACCTAAAGTATTTAAGTAGAAAGGTTACTAAGCTAgtaaatttgattatttttcctGCATCAAAATACCTCCTAATGGAAAATATCCTTCACAGGGCTGAATATTCCTCCAATAATCATTTTCACTGAGGTAAAATGCTTGCTAAAAAGTTCATATTGTATTGTTTCCTGTAATTTCGTTTCAGtgctgtaaaatactgtaaatatgtttgtttgtgaCAGAATTGTAATACCTGTTTAGGTAGAAATTTTGTTTGGTAAAACTGTCTCTTAATGCCACATTAAAAAACCTCAAAGAAATAaaaaaaaaaaaaaaaaaaaaacataacagtaACAATATGAAGTTTTTGGTTAATAAACCTAATTCACAGTGCTGCTGTTGGAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243619 False 1356 lncRNA 0.40 2 28954049 28974201
TU243624 True 1906 lncRNA 0.34 2 29012648 29088595

Neighbor

gene id symbol gene type direction distance location
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding downstream 4133 28939591 ~ 28949916 (-)
LOC103039144 LOC108423784,LOC108277316 coding downstream 383944 28411012 ~ 28570105 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 1347766 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 1359525 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 1414339 27528660 ~ 27539710 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 70445 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 484059 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1190501 30279096 ~ 30419086 (-)
crybg3 NA coding upstream 1589176 30677771 ~ 30733688 (-)
hlcs hlcs coding upstream 1712924 30801519 ~ 30848802 (-)
G179845 NA non-coding downstream 2369 28951464 ~ 28951680 (-)
G179843 NA non-coding downstream 20907 28915288 ~ 28933142 (-)
G179844 NA non-coding downstream 36987 28916682 ~ 28917062 (-)
G179842 NA non-coding downstream 41578 28912169 ~ 28912471 (-)
G179779 NA non-coding downstream 105305 28659992 ~ 28848744 (-)
G179913 NA non-coding upstream 416964 29505559 ~ 29505986 (-)
G179995 NA non-coding upstream 735248 29823843 ~ 29824092 (-)
G179996 NA non-coding upstream 735632 29824227 ~ 29824519 (-)
LOC111194987 NA non-coding upstream 797867 29886462 ~ 29904159 (-)
G180002 NA non-coding upstream 815221 29903816 ~ 29905018 (-)
G179816 NA other downstream 102944 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 1387357 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1428661 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 1429914 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1476071 27470086 ~ 27477978 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 1858351 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 2805607 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3151584 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3347730 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 4716645 33805240 ~ 33855632 (-)

Expression


Co-expression Network