G179842


Basic Information

Item Value
gene id G179842
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 28912169 ~ 28912471 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243635
atattgtggcgtgaggaggcgggggaaccgtgggtccgccccacgccagaactcacagccatgtctgtcccagccggtgtgcattcaggactgattaagccgccagctgggacaggcataaAAACTCTGCCTCAGCTCACACTCGGGAGAGACTTGGACTTGGGAGGAGTGAGCTGAGGCCGCACGGACCTTTAAACGACCACTAAGTGATTtatacagactctagagccccattgggccgagttatgtttatttaagtttgtttttgggtgtggtggagggcattttcgaaaataaaggtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243635 True 303 lncRNA 0.53 1 28912169 28912471

Neighbor

gene id symbol gene type direction distance location
LOC103039144 LOC108423784,LOC108277316 coding downstream 342064 28411012 ~ 28570105 (-)
LOC103041089 lim2.1,LOC103041089,LOC108423752,LOC107579014 coding downstream 1305886 27600092 ~ 27606283 (-)
bsx bsx,LOC107747047 coding downstream 1317645 27591571 ~ 27594524 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399,LOC107577081 coding downstream 1372459 27528660 ~ 27539710 (-)
LOC103027279 NA coding downstream 1393607 27511131 ~ 27518562 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding upstream 27120 28939591 ~ 28949916 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding upstream 41568 28954039 ~ 28998439 (-)
robo3 robo3,LOC107751391,LOC107577175 coding upstream 246569 29159040 ~ 29364276 (-)
picalm picalm,LOC107744613 coding upstream 660183 29572654 ~ 29628399 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 1366625 30279096 ~ 30419086 (-)
G179779 NA non-coding downstream 63425 28659992 ~ 28848744 (-)
G179815 NA non-coding downstream 64691 28847119 ~ 28847478 (-)
G179814 NA non-coding downstream 68194 28843700 ~ 28843975 (-)
G179766 NA non-coding downstream 257421 28654522 ~ 28654748 (-)
G179764 NA non-coding downstream 258281 28653671 ~ 28653888 (-)
G179843 NA non-coding upstream 2817 28915288 ~ 28933142 (-)
G179844 NA non-coding upstream 4211 28916682 ~ 28917062 (-)
G179845 NA non-coding upstream 38993 28951464 ~ 28951680 (-)
G179837 NA non-coding upstream 41578 28954049 ~ 29088595 (-)
G179848 NA non-coding upstream 78142 28990613 ~ 28991127 (-)
G179816 NA other downstream 61064 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 1345477 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 1386781 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 1388034 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 1434191 27470086 ~ 27477978 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 2034475 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 2981731 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 3327708 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 3523854 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 4892769 33805240 ~ 33855632 (-)

Expression


Co-expression Network