G179901


Basic Information

Item Value
gene id G179901
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29505553 ~ 29505977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243715
tatgaattttttctttacaaaatgcTGAATTACTCGTTACGTCTATTTTTAAGTGtactaatttgttttttttttactatttgatATTTAATTGCATGAATTTGTTCCCACcttgttctttttattattgatatttttttgttcttttttctgtgAGTTATTAAGTTAAACTCAGAAGTTCTCTCCAGCAGGATACACACTGTCTGTTTTAAAATTTTGAAGTGAATGTTGGACGAGCGCTTATACGAGTACATTCATTACTGTACTGTGTGTTTCAGGCAGAACTCCCAAACAACAGAGCGTGTATTGGCTTTTATTAAAAGTGTTGTGGAGGATCTCAGACTATTATGTATATGGGACATTTGCTGTacatgaaaacagaaaaaaacactttgtatGAATATTTGTAATTAAATGAGAGCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243715 True 425 lncRNA 0.31 1 29505553 29505977

Neighbor

gene id symbol gene type direction distance location
esam NA coding upstream 2385 29428891 ~ 29503168 (+)
msantd2 msantd2,LOC107577222,LOC107588693 coding upstream 83646 29415823 ~ 29421907 (+)
robo4 robo4 coding upstream 356743 29108308 ~ 29148810 (+)
tmem218 tmem218 coding upstream 406761 29090621 ~ 29098792 (+)
LOC103040165 LOC108423783,LOC108277314,LOC107746996 coding upstream 1120458 27672949 ~ 28385095 (+)
LOC103034698 v26bl,LOC108423787,LOC107588734,LOC107751386,LOC107691644,LOC105024202 coding downstream 4121 29510098 ~ 29516946 (+)
fez1 fez1,LOC107691643,LOC107751387 coding downstream 22337 29528314 ~ 29557162 (+)
ccdc83 NA coding downstream 56567 29562544 ~ 29573245 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding downstream 140715 29646692 ~ 29669237 (+)
LOC103038373 NA coding downstream 177253 29683230 ~ 29691495 (+)
LOC111195084 NA non-coding upstream 200156 29303039 ~ 29305397 (+)
G179872 NA non-coding upstream 204216 29300587 ~ 29301337 (+)
G179820 NA non-coding upstream 572413 28915333 ~ 28933140 (+)
G179819 NA non-coding upstream 593100 28912175 ~ 28912453 (+)
G179776 NA non-coding upstream 700846 28733121 ~ 28804707 (+)
LOC111195086 NA non-coding downstream 122514 29628491 ~ 29640752 (+)
G179985 NA non-coding downstream 248254 29754231 ~ 29754625 (+)
G179989 NA non-coding downstream 289744 29795721 ~ 29796232 (+)
G179992 NA non-coding downstream 316950 29822927 ~ 29823261 (+)
G180022 NA non-coding downstream 621253 30127230 ~ 30127650 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 1980112 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2589209 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2626470 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4248084 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5050931 24447792 ~ 24454622 (+)
G180235 erg other downstream 1633367 31139344 ~ 31151095 (+)
G180266 NA other downstream 1927221 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2759021 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3544265 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4666947 34172924 ~ 34328970 (+)

Expression


Co-expression Network