G179992


Basic Information

Item Value
gene id G179992
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29822927 ~ 29823261 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243841
tccacctcctccacctcttTTTTAGCCTGTTTTGCCCCCTTTTCATTTgccttacattttcttttattagttgGAACTTTAAAAACAGCTTCATCCTCCATTGAAACCTCAGCCTCAAGCTCATGtactgctgctggagctggagtcaGCCCAGAACAGCTGGCCTGTACTTTAGCCTCCAGCTGCTGAGCCTCACCTGGTTCCCCCACAGCCTGCACCTCCACAGCCTGCACCTCCACAGCCTgcacctccacagcctgctcctccacagcctgctcctccacagcctgctcctccacagcctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243841 True 305 lncRNA 0.54 2 29822927 29823261

Neighbor

gene id symbol gene type direction distance location
LOC103038990 NA coding upstream 105048 29701362 ~ 29717879 (+)
LOC103038373 NA coding upstream 131432 29683230 ~ 29691495 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding upstream 153690 29646692 ~ 29669237 (+)
ccdc83 NA coding upstream 249682 29562544 ~ 29573245 (+)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 265765 29528314 ~ 29557162 (+)
alcam NA coding downstream 309933 30133194 ~ 30268718 (+)
bbx bbx coding downstream 680784 30504045 ~ 30560931 (+)
LOC103035352 NA coding downstream 768597 30591858 ~ 30615583 (+)
LOC107196917 NA coding downstream 794339 30617600 ~ 30628614 (+)
LOC103034395 NA coding downstream 819642 30642903 ~ 30647778 (+)
G179989 NA non-coding upstream 26695 29795721 ~ 29796232 (+)
G179985 NA non-coding upstream 68302 29754231 ~ 29754625 (+)
LOC111195086 NA non-coding upstream 182175 29628491 ~ 29640752 (+)
G179901 NA non-coding upstream 316950 29505553 ~ 29505977 (+)
LOC111195084 NA non-coding upstream 517530 29303039 ~ 29305397 (+)
G180022 NA non-coding downstream 303969 30127230 ~ 30127650 (+)
G180026 NA non-coding downstream 337971 30161232 ~ 30162112 (+)
G180027 NA non-coding downstream 341963 30165224 ~ 30167652 (+)
G180031 NA non-coding downstream 448153 30271414 ~ 30272440 (+)
G180032 NA non-coding downstream 449220 30272481 ~ 30273719 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2297486 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 2906583 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 2943844 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 4565458 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5368305 24447792 ~ 24454622 (+)
G180235 erg other downstream 1316083 31139344 ~ 31151095 (+)
G180266 NA other downstream 1609937 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 2441737 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 3226981 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 4349663 34172924 ~ 34328970 (+)

Expression


Co-expression Network