G180002


Basic Information

Item Value
gene id G180002
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 29903816 ~ 29905018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243853
tgtGACGCCCACAAAGTGATGGTcacatttgtaattatttttttgttattgttatcattttttgtttattttattctgctACCTTATGAACTTCTGCTGTGAAAGCTCAAATCAGATGTTGTTGTTGCCTAAGATGTCCAGTAGGGTGCACTGTGGCGTTTGATATCTACTGCAGCTAGCAGCTCTGCTTCTCAGACTTGAGAAGCTGCTGAACAGAGAAGCCACGTTTCCTCGTGTCTCATCCTTTTCACCCTGTTTACAGGTATTTAATTTGCTTACACTGACCCTGGGCTCGGGGAGTGtaacata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243853 True 309 lncRNA 0.41 2 29903816 29905018

Neighbor

gene id symbol gene type direction distance location
picalm picalm,LOC107744613 coding downstream 275417 29572654 ~ 29628399 (-)
robo3 robo3,LOC107751391,LOC107577175 coding downstream 539540 29159040 ~ 29364276 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding downstream 905377 28954039 ~ 28998439 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding downstream 953900 28939591 ~ 28949916 (-)
LOC103039144 LOC108423784,LOC108277316 coding downstream 1333711 28411012 ~ 28570105 (-)
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding upstream 374078 30279096 ~ 30419086 (-)
crybg3 NA coding upstream 772753 30677771 ~ 30733688 (-)
hlcs hlcs coding upstream 896501 30801519 ~ 30848802 (-)
pigp NA coding upstream 952739 30857757 ~ 30875590 (-)
dscr3 dscr3 coding upstream 1021150 30926168 ~ 30932814 (-)
G179996 NA non-coding downstream 79297 29824227 ~ 29824519 (-)
G179995 NA non-coding downstream 79724 29823843 ~ 29824092 (-)
G179913 NA non-coding downstream 397830 29505559 ~ 29505986 (-)
LOC111195083 NA non-coding downstream 814857 29042489 ~ 29088959 (-)
G179848 NA non-coding downstream 912689 28990613 ~ 28991127 (-)
G180007 NA non-coding upstream 5038 29910056 ~ 29910315 (-)
G180011 NA non-coding upstream 51211 29956229 ~ 29959157 (-)
G180014 NA non-coding upstream 167157 30072175 ~ 30072408 (-)
G180015 NA non-coding upstream 168998 30074016 ~ 30074391 (-)
G180023 NA non-coding upstream 222173 30127191 ~ 30127665 (-)
G179816 NA other downstream 1052711 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 2337124 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2378428 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 2379681 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 2425838 27470086 ~ 27477978 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 1041928 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 1989184 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 2335161 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 2531307 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 3900222 33805240 ~ 33855632 (-)

Expression


Co-expression Network