G180032


Basic Information

Item Value
gene id G180032
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30272481 ~ 30273719 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243894
cacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctcgcgggccgctccaaaaaaggaaacgggccacaaatggcccgcgggccgtagtttggacacccctgctctacagcCTCTTCTtactcatccctctctctctctctttctctagttctgtatctttctctcactgtgTGGAACAGACAGCATTCAGTCACTTTTTTAATCATCCAACATGTTCCCGTCTACATGAATATAAACCTGAATATAGAAGCTATTTGATCTGCTCTGACCTTTAAAGAAGAAGCTCACGGTCGCTCTGACGGAGGAATAAAGTCCGCTTGATCCGGACCTGCAGGTGAAAACATCGGAacgaggagcaggaggaggaggagggcctTAATTTGGAGTGTCCTGCTTAATTTGCTGTCCACTGATGGCTGCTCTCTCCTCATTATACAGCCTCAGGCAGGAAATCTTAAAATGTTGAATATCAGAGAGCAAAGCCAAAAACCCAAGACTTGCCTAATTACTAATTACCATCCTCTGGATAACTAATCTGTGAACGTGAATAAAAGACATTCAGACATTCAGAAACCTTTCATTTGGCAACTGGAGAGAAAAGTCAGGACTGAATTGAATTTTCGCTGCATGTTGGAGACCAGAGTGTTTACAGAGCTGAAGGTCTAATGAATTCAAAGAAACCTAATAAAGAGTCTCTGCACTGACTCTTCTCTGAGAAACAGCATTTTTAGAGAGTTATTATAAGGAATACTCCAGTGATTTCAACCCGATCTCTATATGCTA
>TU243895
cacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctcgcgggccgctccaaaaaaggaaacgggccacaaatggcccgcgggccgtagtttggacacccctgctctacagcCTCTTCTtactcatccctctctctctctctttctctagttctgtatctttctctcactgtgTGGAACAGACAGCATTCAGTCACTTTTTTAATCATCCAACATGTTCCCGTCTACATGAATATAAACCTGAATATAGAAGCTATTTGATCTGCTCTGACCTTTAAAGAAGAAGCTCACGGTCGCTCTGACGGAGGAATAAAGTCCGCTTGATCCGGACCTGCAGGTGAAAACATCGGAacgaggagcaggaggaggaggagggcctTAATTTGGAGTGTCCTGCTTAATTTGCTGTCCACTGATGGCTGCTCTCTCCTCATTATACAGCCTCAGGCAGGAAATCTTAAAATGTTGAATATCAGAGAGCAAAGCCAAAAACCCAAGACTTGCCTAATTACTAATTACCATCCTCTGGATAACTAATCTGTGAACGTGAATAAAAGACATTCAGACATTCAGAAACCTTTCATTTGGCAACTGGAGAGAAAAGTCAGGACTGAATTGAATTTTCGCTGCATGTTGGAGACCAGAGTGTTTACAGAGCTGAAGGTCTAATGAATTCAAAGAAACCTAATAAAGAGTCTCTGCACTGACTCTTCTCTGAGAAACAGCATTTTTAGAGAGTTATTATAAGGAATACTCCAGTGATTTCAACCCGATCTCTATATGCTACATCTGTAGCGTATAACTGATTCAACTAGGTTGAAGCCAAAAgataataatagataataatactGCATCTCAaacatttgaatatcattgaaaagttactttatttcagtaattcaatgcaaaatgtgaaactcatattatatatagatgtattacatacagagtgatctattgtaagcatttattttattttattgttgatgtttatggctacagccaataaaaaaaataaataaatcaatgtctcagaaaattagaatatgataagagaccaattagtactttcAGCAGTGTAcgtgttgatccactgttttatcatcaagtctaaagtcagtgcagttttgttttcccgcaaaatcttacagaacttcattttccagcaggacttggcacactgccaaaaatacc
>TU243897
cacctagcgttcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatacctcgcgggccgctccaaaaaaggaaacgggccacaaatggcccgcgggccgtagtttggacacccctgctctacagcCTCTTCTtactcatccctctctctctctctttctctagttctgtatctttctctcactgtgTGGAACAGACAGCATTCAGTCACTTTTTTAATCATCCAACATGTTCCCGTCTACATGAATATAAACCTGAATATAGAAGCTATTTGATCTGCTCTGACCTTTAAAGAAGAAGCTCACGGTCGCTCTGACGGAGGAATAAAGTCCGCTTGATCCGGACCTGCAGGTGAAAACATCGGAacgaggagcaggaggaggaggagggcctTAATTTGGAGTGTCCTGCTTAATTTGCTGTCCACTGATGGCTGCTCTCTCCTCATTATACAGCCTCAGGCAGGAAATCTTAAAATGTTGAATATCAGAGAGCAAAGCCAAAAACCCAAGACTTGCCTAATTACTAATTACCATCCTCTGGATAACTAATCTGTGAACGTGAATAAAAGACATTCAGACATTCAGAAACCTTTCATTTGGCAACTGGAGAGAAAAGTCAGGACTGAATTGAATTTTCGCTGCATGTTGGAGACCAGAGTGTTTACAGAGCTGAAGGTCTAATGAATTCAAAGAAACCTAATAAAGAGTCTCTGCACTGACTCTTCTCTGAGAAACAGCATTTTTAGAGAGTTATTATAAGGAATACTCCAGTGATTTCAACCCGATCTCTATATGCTACATCTGTAGCGTATAACTGATTCAACTAGGTTGAAGCCAAAAgataataatagataataatactGCATCTCAaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243894 False 831 lncRNA 0.43 1 30272481 30273311
TU243895 True 1239 lncRNA 0.39 1 30272481 30273719
TU243897 False 906 lncRNA 0.42 1 30272481 30273386

Neighbor

gene id symbol gene type direction distance location
alcam NA coding upstream 3763 30133194 ~ 30268718 (+)
LOC103038990 NA coding upstream 554602 29701362 ~ 29717879 (+)
LOC103038373 NA coding upstream 580986 29683230 ~ 29691495 (+)
LOC103038052 zpld1,zpld1a,LOC103038052,LOC108276676,LOC107548885,LOC107693966 coding upstream 603244 29646692 ~ 29669237 (+)
ccdc83 NA coding upstream 699236 29562544 ~ 29573245 (+)
bbx bbx coding downstream 230326 30504045 ~ 30560931 (+)
LOC103035352 NA coding downstream 318139 30591858 ~ 30615583 (+)
LOC107196917 NA coding downstream 343881 30617600 ~ 30628614 (+)
LOC103034395 NA coding downstream 369184 30642903 ~ 30647778 (+)
tiprl tiprl,LOC106603731 coding downstream 375728 30649447 ~ 30654188 (+)
G180031 NA non-coding upstream 41 30271414 ~ 30272440 (+)
G180027 NA non-coding upstream 104829 30165224 ~ 30167652 (+)
G180026 NA non-coding upstream 110369 30161232 ~ 30162112 (+)
G180022 NA non-coding upstream 144831 30127230 ~ 30127650 (+)
G179992 NA non-coding upstream 449220 29822927 ~ 29823261 (+)
G180073 NA non-coding downstream 198537 30472256 ~ 30472602 (+)
G180079 NA non-coding downstream 268105 30541824 ~ 30547971 (+)
G180096 NA non-coding downstream 302338 30576057 ~ 30581857 (+)
LOC111194988 NA non-coding downstream 360431 30634150 ~ 30635101 (+)
G180102 crybg3 non-coding downstream 404149 30677868 ~ 30681397 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 2747040 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 3356137 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 3393398 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5015012 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 5817859 24447792 ~ 24454622 (+)
G180235 erg other downstream 865625 31139344 ~ 31151095 (+)
G180266 NA other downstream 1159479 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1991279 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 2776523 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 3899205 34172924 ~ 34328970 (+)

Expression


Co-expression Network