G180077


Basic Information

Item Value
gene id G180077
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30476450 ~ 30477009 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU243945
GCCCCAGCAGAGCTCAGAAGAGAAGCAGCCATGCTGGTTCTAGCTCGGAAGGCACAGATGAGTGAATCCCACCTCCTCCACAAGACCGTCACAAAGTCTTCACAGCGCATGCGCCTCAAGTCCTGACGCCCCTTTGCCACACATGCCCAGGAACTGCTCTGCACAACACCAGTTGACATCTCCAAGGCCTCCTGGGTGAGGGCAAGATGGAAGGACCAGTGGAAGGCAGCAGGACCATCTACACTGCATCAGTTTATCAAAGATCCGACGGATGTACCTGGCCAGCATCTTACCCGTAGGGAGTGGACAACCCTAAACCGCCTGAGAACAGGAGTAGGGCGCTTTGGTGCAGTGATGCAGAGGTGGGGTCTTACAGACAGTGCCCACTGCGAATGTGGGGACCCATCACAAACTCTGGAACACGTGATGACTACCTGCCCCAAATTCCGGCCACCAAATGGCACTCAAGGTCTAATAGACCTGGACAACGAAACACTGGACTGGCTTGCAGCAACAGAACTGAGGGTCTAAGGACAtacgccagagagagagagagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU243945 True 560 lncRNA 0.55 1 30476450 30477009

Neighbor

gene id symbol gene type direction distance location
cblb cblb,LOC107693962,LOC107576804,LOC107747038 coding downstream 57364 30279096 ~ 30419086 (-)
picalm picalm,LOC107744613 coding downstream 848051 29572654 ~ 29628399 (-)
robo3 robo3,LOC107751391,LOC107577175 coding downstream 1112174 29159040 ~ 29364276 (-)
pknox2 pknox2,LOC107691639,LOC106567647,LOC106603668 coding downstream 1478011 28954039 ~ 28998439 (-)
panx3 panx3,LOC107747045,LOC107686209,LOC107589683,LOC107579026,LOC107691702 coding downstream 1526534 28939591 ~ 28949916 (-)
crybg3 NA coding upstream 200762 30677771 ~ 30733688 (-)
hlcs hlcs coding upstream 324510 30801519 ~ 30848802 (-)
pigp NA coding upstream 380748 30857757 ~ 30875590 (-)
dscr3 dscr3 coding upstream 449159 30926168 ~ 30932814 (-)
kcnj6 kcnj6,LOC107690833,LOC107747353 coding upstream 495471 30972480 ~ 31057287 (-)
G180056 NA non-coding downstream 161807 30313315 ~ 30314643 (-)
G180045 NA non-coding downstream 197840 30276867 ~ 30278610 (-)
G180046 NA non-coding downstream 200732 30274739 ~ 30275718 (-)
G180044 NA non-coding downstream 203042 30272607 ~ 30273408 (-)
G180047 NA non-coding downstream 207740 30219248 ~ 30268710 (-)
G180086 NA non-coding upstream 64815 30541824 ~ 30548024 (-)
G180092 NA non-coding upstream 86813 30563822 ~ 30564737 (-)
G180122 NA non-coding upstream 100296 30577305 ~ 30578205 (-)
G180196 NA non-coding upstream 413659 30890668 ~ 30907924 (-)
G180197 NA non-coding upstream 434441 30911450 ~ 30919603 (-)
G179816 NA other downstream 1625345 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 2909758 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 2951062 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 2952315 27523131 ~ 27524135 (-)
ift46 ift46 other downstream 2998472 27470086 ~ 27477978 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other upstream 469937 30946946 ~ 30957767 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 1417193 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 1763170 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 1959316 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 3328231 33805240 ~ 33855632 (-)

Expression


Co-expression Network