G180167


Basic Information

Item Value
gene id G180167
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 30926205 ~ 30927334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244080
GTTTTTACAGAAATCAGTGTAGAAatcgggattagtttctcaggtggacgtctgtgaaaaaattTTTCACACATcaactcagtgataaaactcttgcatctggactgcaattttTGCTTTCTCGATCACGTGaccgcgttcagtagctcctccatttccactcgctgttgtgtttacggggatctctgtggaaatgcgcgcccaaagtgtaattacggtgtgtaacagtggaaaaatagatattttattaaacacaaggagACGAAACTTGTTAAACCACAAAACAGAAAAGACCATAGCTTGAAGCTTTGGCAACTGTCGTTTGAAagagttgtcccaattcttCAGGGGGAGTATTTCACCCGTTcctcttgtaactctgttctaaGGGCAAGGGGtccaaaagagaaatgggataaTGCGTGAGTTTAATCATATTATAAATGACATGGCACTGGATCTCTGCAGATGTCCAGGGTTAGTAAACCATGTACCACAAGGCAACATAAGAAGAATAATGATCGTTACAAACCAGTAATTGCTCATGGTAATTATTTGGCAACTGCTTGGTCAGTCTACTATCAGAACACTGTGActctctgtactgtacattttatagTTGTGGTAAATACCAGCACCCATAGCTCCAAAACTGCCCCCACTGCAGCAATTCTTGACTGGGACCAGAAAAACACATAAGGTCACTTTGCAAAATATCCAACAGTTAATGCTGGTAAATCTGTAGACTTCGGCGTCACACTCTGCACAGCTTCAAGGGGAAGTTTTCCGTTATTAAATGGTCGTCGTGAAGAACGATCACCACGTTCATCTCAAACACCAACATTAAAGTTTGTAGTTTCAAGTGTAGGACAAGTGAAGAGCCTGGGGAACACCATGTATATTGGGATGGGGAGGCCGTGACACACATCTCCTTCTGCAATCTGGATGTTCTGAATCTCTGTTGCATCCCTGGCATACCCCTCAGCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244080 True 990 lncRNA 0.43 2 30926205 30927334

Neighbor

gene id symbol gene type direction distance location
ttc3 NA coding upstream 1256 30876529 ~ 30924949 (+)
ripply3 NA coding upstream 72050 30850265 ~ 30854155 (+)
sim2 sim2,LOC106603444,LOC107572951,LOC107676491 coding upstream 135468 30761463 ~ 30790737 (+)
riox2 mina coding upstream 251427 30657193 ~ 30674778 (+)
tiprl tiprl,LOC106603731 coding upstream 272017 30649447 ~ 30654188 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding downstream 7923 30935257 ~ 30950930 (+)
kcnj15 kcnj15 coding downstream 184681 31112015 ~ 31116695 (+)
ets2 ets2 coding downstream 310454 31237788 ~ 31244884 (+)
mpzl1 LOC108423808 coding downstream 367731 31295065 ~ 31314439 (+)
LOC103032011 NA coding downstream 421907 31349241 ~ 31360268 (+)
G180166 NA non-coding upstream 11055 30914616 ~ 30915150 (+)
G180151 NA non-coding upstream 67733 30763569 ~ 30858472 (+)
G180152 NA non-coding upstream 123331 30798994 ~ 30802874 (+)
G180102 crybg3 non-coding upstream 244808 30677868 ~ 30681397 (+)
LOC111194988 NA non-coding upstream 291104 30634150 ~ 30635101 (+)
G180173 kcnj6,LOC107744206 non-coding downstream 36667 30964001 ~ 30973699 (+)
G180174 NA non-coding downstream 57678 30985012 ~ 30985241 (+)
G180228 NA non-coding downstream 169039 31096373 ~ 31097005 (+)
G180233 NA non-coding downstream 191779 31119113 ~ 31120310 (+)
G180237 NA non-coding downstream 282878 31210212 ~ 31230637 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3400764 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4009861 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4047122 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5668736 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 6471583 24447792 ~ 24454622 (+)
G180235 erg other downstream 212010 31139344 ~ 31151095 (+)
G180266 NA other downstream 505864 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1337664 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 2122908 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 3245590 34172924 ~ 34328970 (+)

Expression


Co-expression Network