G180228


Basic Information

Item Value
gene id G180228
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31096373 ~ 31097005 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244151
ACGTTTGCGCTCTGCCACAGTCGTGctgccgtaccacacggtgatgcAGCTGGTCAGGAGGCTCTCGATCACACAGCTGTAGAAGTTGTTGAGGATCTTGGGAGACATCCCAAACTTCCTCAGTCTCCTCAGAAAGTACAGCCGCTGTTGAGCCTTTTTGACCAGCTGCGTTGTGTTTATTGTCCATGTGAGGTCCTGACTGATGTGGACGCCCAGGTATTTGAagctgctcactctctccacttcaAGTTCCCGGATGAACAGTGGCTGATGAGGTCTCCTCCCCTTTCTCATGTCCACTATCAGCTCCTTTGTCTTGACCGTGTTGAGAGCGAGATTGTTGTCTTCGCACCATAACACCAGCCTGGTCACCTCACTCCTGTAGGCCGCTTCATCTCCGCCAGTGATGCGTCCTATCACCGCGGTATCATCAGCGAACTTCAGGATGATATTGTCCTTGTGTGAGGCGACACGGTCGTGGGTAAACAGTGTGTAAAGGATGGGGCTGAGGACACATCCCTGTGGGGTGCCGGTGTAGGTGGTGATGCTGGCTGAAGTCCTGTTGCCAATCCTTACAGACTGGGGCCTGCCAGTCAGGAAATCCAGGAGCCAGTCGCAGAGGGAGGGGTGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244151 True 633 lncRNA 0.54 1 31096373 31097005

Neighbor

gene id symbol gene type direction distance location
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 145443 30935257 ~ 30950930 (+)
ttc3 NA coding upstream 171424 30876529 ~ 30924949 (+)
ripply3 NA coding upstream 242218 30850265 ~ 30854155 (+)
sim2 sim2,LOC106603444,LOC107572951,LOC107676491 coding upstream 305636 30761463 ~ 30790737 (+)
riox2 mina coding upstream 421595 30657193 ~ 30674778 (+)
kcnj15 kcnj15 coding downstream 15010 31112015 ~ 31116695 (+)
ets2 ets2 coding downstream 140783 31237788 ~ 31244884 (+)
mpzl1 LOC108423808 coding downstream 198060 31295065 ~ 31314439 (+)
LOC103032011 NA coding downstream 252236 31349241 ~ 31360268 (+)
LOC103030242 chordc1 coding downstream 976622 32073627 ~ 32086443 (+)
G180174 NA non-coding upstream 111132 30985012 ~ 30985241 (+)
G180173 kcnj6,LOC107744206 non-coding upstream 122674 30964001 ~ 30973699 (+)
G180167 NA non-coding upstream 169039 30926205 ~ 30927334 (+)
G180166 NA non-coding upstream 181223 30914616 ~ 30915150 (+)
G180151 NA non-coding upstream 237901 30763569 ~ 30858472 (+)
G180233 NA non-coding downstream 22108 31119113 ~ 31120310 (+)
G180237 NA non-coding downstream 113207 31210212 ~ 31230637 (+)
G180260 NA non-coding downstream 297981 31394986 ~ 31395348 (+)
G180263 NA non-coding downstream 325465 31422470 ~ 31423208 (+)
G180264 NA non-coding downstream 326607 31423612 ~ 31426111 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3570932 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4180029 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4217290 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5838904 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 6641751 24447792 ~ 24454622 (+)
G180235 erg other downstream 42339 31139344 ~ 31151095 (+)
G180266 NA other downstream 336193 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1167993 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1953237 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 3075919 34172924 ~ 34328970 (+)

Expression


Co-expression Network