G180235 (erg)


Basic Information

Item Value
gene id G180235
gene name erg
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31139344 ~ 31151095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244158
CTCAAGTGTATGCtcgagtgtatgtgtgtgttggcgtgtgaatgtgtgtgtatgagagagagaaaaaagagaaacaaagagagagagagacctgcaGGAACGATGACTCTGCGTTCGTTGGTGGTCATGTTGGGTGGGGGGATGTGTTTGTCTTCCATGTAGTTGCTGTAGGTCATAGGAGCACCTTCTCCTCCACCTGCTATCTTCCCTTTACCTACACCACAGTCATCTGGAGAACTCCTgcacagaCTGGAGCCATTCACCTGCCCTCCTCCAGTTCCTCCTCCACCCCCTGTagctcctcctccactgctgcaCTCCATCTTGATGGTGACTCGGCCGGGCGGAGCGGTGAGCCAGTCCTGAGGCGCTCGCGGGCTCAGTTTACTCTGACCGTACTCAGCGGCCGCCGACGCCGTCATCTCCGCTTTACTCTGGTGGGCCACGCTGTACGCACACTCAAACAGAGACTGATCCTCACTCACCACAGAC

Function

symbol description
erg Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within angiogenesis and hemangioblast cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; intermediate cell mass of mesoderm; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in myeloid leukemia. Orthologous to human ERG (ETS transcription factor ERG).

NR:

description
transcriptional regulator ERG isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244158 True 492 TUCP 0.55 2 31139344 31151095

Neighbor

gene id symbol gene type direction distance location
kcnj15 kcnj15 coding upstream 22649 31112015 ~ 31116695 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 188414 30935257 ~ 30950930 (+)
ttc3 NA coding upstream 214395 30876529 ~ 30924949 (+)
ripply3 NA coding upstream 285189 30850265 ~ 30854155 (+)
sim2 sim2,LOC106603444,LOC107572951,LOC107676491 coding upstream 348607 30761463 ~ 30790737 (+)
ets2 ets2 coding downstream 86693 31237788 ~ 31244884 (+)
mpzl1 LOC108423808 coding downstream 143970 31295065 ~ 31314439 (+)
LOC103032011 NA coding downstream 198146 31349241 ~ 31360268 (+)
LOC103030242 chordc1 coding downstream 922532 32073627 ~ 32086443 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding downstream 961261 32112356 ~ 32187729 (+)
G180233 NA non-coding upstream 19034 31119113 ~ 31120310 (+)
G180228 NA non-coding upstream 42339 31096373 ~ 31097005 (+)
G180174 NA non-coding upstream 154103 30985012 ~ 30985241 (+)
G180173 kcnj6,LOC107744206 non-coding upstream 165645 30964001 ~ 30973699 (+)
G180167 NA non-coding upstream 212010 30926205 ~ 30927334 (+)
G180237 NA non-coding downstream 59117 31210212 ~ 31230637 (+)
G180260 NA non-coding downstream 243891 31394986 ~ 31395348 (+)
G180263 NA non-coding downstream 271375 31422470 ~ 31423208 (+)
G180264 NA non-coding downstream 272517 31423612 ~ 31426111 (+)
G180278 emsy,LOC106603772 non-coding downstream 300209 31451304 ~ 31456528 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3613903 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4223000 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4260261 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5881875 25244161 ~ 25257469 (+)
LOC103032894 LOC108424565 other upstream 6684722 24447792 ~ 24454622 (+)
G180266 NA other downstream 282103 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1113903 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1899147 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 3021829 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 3183481 34334576 ~ 34507324 (+)

Expression


Co-expression Network