G180237


Basic Information

Item Value
gene id G180237
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31210212 ~ 31230637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244162
ctctctccccacatcactcctacggggatgtctgcagcacagggcgtctgtgagctgatgtactggagccgagccgctgcgctttcctccaagcgcgctggctgctcggtaatgctgcatcagcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgctagtcttcaccctcctggtgtgttgaggtatcactagtgatagggggagtcctaatgaatgggttgggtaattggccgtgtaaattggggagaaaatgggaaaaaattagaaataaaattataaaaaaaaaaaaaaaaagtaccagtcaaaagtttgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244162 True 338 lncRNA 0.48 2 31210212 31230637

Neighbor

gene id symbol gene type direction distance location
kcnj15 kcnj15 coding upstream 93517 31112015 ~ 31116695 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 259282 30935257 ~ 30950930 (+)
ttc3 NA coding upstream 285263 30876529 ~ 30924949 (+)
ripply3 NA coding upstream 356057 30850265 ~ 30854155 (+)
sim2 sim2,LOC106603444,LOC107572951,LOC107676491 coding upstream 419475 30761463 ~ 30790737 (+)
ets2 ets2 coding downstream 7151 31237788 ~ 31244884 (+)
mpzl1 LOC108423808 coding downstream 64428 31295065 ~ 31314439 (+)
LOC103032011 NA coding downstream 118604 31349241 ~ 31360268 (+)
LOC103030242 chordc1 coding downstream 842990 32073627 ~ 32086443 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding downstream 881719 32112356 ~ 32187729 (+)
G180233 NA non-coding upstream 89902 31119113 ~ 31120310 (+)
G180228 NA non-coding upstream 113207 31096373 ~ 31097005 (+)
G180174 NA non-coding upstream 224971 30985012 ~ 30985241 (+)
G180173 kcnj6,LOC107744206 non-coding upstream 236513 30964001 ~ 30973699 (+)
G180167 NA non-coding upstream 282878 30926205 ~ 30927334 (+)
G180260 NA non-coding downstream 164349 31394986 ~ 31395348 (+)
G180263 NA non-coding downstream 191833 31422470 ~ 31423208 (+)
G180264 NA non-coding downstream 192975 31423612 ~ 31426111 (+)
G180278 emsy,LOC106603772 non-coding downstream 220667 31451304 ~ 31456528 (+)
G180280 nhlrc3 non-coding downstream 232668 31463305 ~ 31464839 (+)
G180235 erg other upstream 59117 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3684771 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4293868 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4331129 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 5952743 25244161 ~ 25257469 (+)
G180266 NA other downstream 202561 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 1034361 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1819605 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 2942287 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 3103939 34334576 ~ 34507324 (+)

Expression


Co-expression Network