G180263


Basic Information

Item Value
gene id G180263
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31422470 ~ 31423208 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244190
TTAAAGTTTCTGAAATACAGTTAAAATACTAAATTTTACATCAAGGGTGACCAGAATTCAAATCACATCATCGGGTGAGcaggtgagtttttttttttgcttcagcaaactgaaaaaaaaaaatattttacaagtgCCTCATCAGGTTGAGAGTATTTTAAATCTGTCAGCATGACCATGGTAAACTTTATTTACAGTTCTGACAGACGTGGCATGATGAGATGAAGATTAGAACGGCTTTCTTAATCCTATGCTTTACAAGGGGAAATTCCAaccatttttcataaaaaatcctgtttttacTTCAGTCTCTGAGCTGTAAACAGAGTCATTCAGTGGTGTGATGTGGAATGGGGTCGTTGTAGAAAATCCCAGCATGCCAGTGGTGGTGAGGTGATCCAGGGTTCAGAACATCTACAGCGCAAATATATACAGTCACGTTATTTGTCATCTAAATGGTCAGATGTGACATTTGACTGGtggatattaaaatgtaatgttggTAAATGTACAAAAGTGGTAAATGTGGGGGATTTTACCTCTCAGAGTTTTGAAAATATTAATCACAAGCTGGACTGCTATCAACGTATCTGAAGTCCAGGACAAAAAAGCAGCTCAAACTGAATTAGAAATACCCAGagatatactgtactgtactagtgcatctcaaaaaaatagaatatcattactTAATTTTAGCAATTCAGTtctaaatgtgaaactcatatattatatagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244190 True 739 lncRNA 0.35 1 31422470 31423208

Neighbor

gene id symbol gene type direction distance location
LOC103032011 NA coding upstream 62202 31349241 ~ 31360268 (+)
mpzl1 LOC108423808 coding upstream 108031 31295065 ~ 31314439 (+)
ets2 ets2 coding upstream 177586 31237788 ~ 31244884 (+)
kcnj15 kcnj15 coding upstream 305775 31112015 ~ 31116695 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 471540 30935257 ~ 30950930 (+)
LOC103030242 chordc1 coding downstream 650419 32073627 ~ 32086443 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding downstream 689148 32112356 ~ 32187729 (+)
LOC103040837 rab38,LOC103040837,LOC108423822,LOC108277304,LOC107701102,LOC107718792,LOC107557212,LOC107693892 coding downstream 767640 32190848 ~ 32205776 (+)
map3k7cl map3k7cl coding downstream 858071 32281279 ~ 32298945 (+)
bach1 NA coding downstream 883249 32306457 ~ 32322948 (+)
G180260 NA non-coding upstream 27122 31394986 ~ 31395348 (+)
G180237 NA non-coding upstream 191833 31210212 ~ 31230637 (+)
G180233 NA non-coding upstream 302160 31119113 ~ 31120310 (+)
G180228 NA non-coding upstream 325465 31096373 ~ 31097005 (+)
G180174 NA non-coding upstream 437229 30985012 ~ 30985241 (+)
G180264 NA non-coding downstream 404 31423612 ~ 31426111 (+)
G180278 emsy,LOC106603772 non-coding downstream 28096 31451304 ~ 31456528 (+)
G180280 nhlrc3 non-coding downstream 40097 31463305 ~ 31464839 (+)
G180350 NA non-coding downstream 319503 31742711 ~ 31742990 (+)
G180399 NA non-coding downstream 458199 31881407 ~ 31881704 (+)
G180235 erg other upstream 271375 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3897029 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4506126 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4543387 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 6165001 25244161 ~ 25257469 (+)
G180266 NA other downstream 9990 31433198 ~ 31433909 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 841790 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1627034 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 2749716 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 2911368 34334576 ~ 34507324 (+)

Expression


Co-expression Network