G180266


Basic Information

Item Value
gene id G180266
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31433198 ~ 31433909 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244193
tccaggtccagtaTAGTGGATATTTTAGTATACTCAACTTTTTACTCAACTTTCATACTCAAAAACAagttagtattagtaattaaCACTCACTTGGgatttagtttgtttatgttactttttagtgtgtatgtttttttattgtgtgttagCTGTTACTAACCTGAGCGCTGCTGCTActggtggtgctgctgctgctggccgCTTTGTCCGAACCCACTGGGTGGTGGGCCTGCAGCGGTGGGGGCTGGGacagttgtgtgtgtatgttagggCGGTTGTGTGAGCTGGGAGCTTGCTGTAGTTTGGgcagctgtggagtgtgtgggggttTGGTGGGGAGTGTGTGCAGGGCAGGCTgggctgctgctgatgcagaggAGGCAGAGGAAGAGGGTGATTGGGAGATGGAGGGTTTAACGGAGGCTGCTGGAGGAGGACAGGGTCTGGGGGTGGTCTGTTCTGGTCTCTTGGGGGCCGGAACCGCTTCAGCTGGTCCTGGGGCAGCTTTGGTGGGCATGGGTGGGGTAGCAGTGGGTTTGGTGAGGGTGTGAGGTGGCGTGCGGTGCTGCTGGAGGGGGGGAGGTGGGGGCTGAGCTGATCTGTAGAAAAGTCCAGTCTGTGGATCCAGTGTGTCACCATCCAACTCGCCCTCCTCCACTACAGTCTGCTCCTCCAGAGGCCTGCCCTGCGCAGGAGAAGCGACAGCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244193 True 712 TUCP 0.55 1 31433198 31433909

Neighbor

gene id symbol gene type direction distance location
LOC103032011 NA coding upstream 72930 31349241 ~ 31360268 (+)
mpzl1 LOC108423808 coding upstream 118759 31295065 ~ 31314439 (+)
ets2 ets2 coding upstream 188314 31237788 ~ 31244884 (+)
kcnj15 kcnj15 coding upstream 316503 31112015 ~ 31116695 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 482268 30935257 ~ 30950930 (+)
LOC103030242 chordc1 coding downstream 639718 32073627 ~ 32086443 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding downstream 678447 32112356 ~ 32187729 (+)
LOC103040837 rab38,LOC103040837,LOC108423822,LOC108277304,LOC107701102,LOC107718792,LOC107557212,LOC107693892 coding downstream 756939 32190848 ~ 32205776 (+)
map3k7cl map3k7cl coding downstream 847370 32281279 ~ 32298945 (+)
bach1 NA coding downstream 872548 32306457 ~ 32322948 (+)
G180264 NA non-coding upstream 7087 31423612 ~ 31426111 (+)
G180263 NA non-coding upstream 9990 31422470 ~ 31423208 (+)
G180260 NA non-coding upstream 37850 31394986 ~ 31395348 (+)
G180237 NA non-coding upstream 202561 31210212 ~ 31230637 (+)
G180233 NA non-coding upstream 312888 31119113 ~ 31120310 (+)
G180278 emsy,LOC106603772 non-coding downstream 17395 31451304 ~ 31456528 (+)
G180280 nhlrc3 non-coding downstream 29396 31463305 ~ 31464839 (+)
G180350 NA non-coding downstream 308802 31742711 ~ 31742990 (+)
G180399 NA non-coding downstream 447498 31881407 ~ 31881704 (+)
G180401 LOC108423819 non-coding downstream 458925 31892834 ~ 31895035 (+)
G180235 erg other upstream 282103 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3907757 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4516854 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4554115 26830637 ~ 26879083 (+)
smpd1 smpd1,LOC107718723,LOC107720657,LOC107556869 other upstream 6175729 25244161 ~ 25257469 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 831089 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1616333 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 2739015 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 2900667 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 3958612 35392521 ~ 35403624 (+)

Expression


Co-expression Network