G180278 (emsy,LOC106603772)


Basic Information

Item Value
gene id G180278
gene name emsy,LOC106603772
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31451304 ~ 31456528 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244206
CTCGATGTCGCTCGGTGGAGATGCTTAGGACTTTGGTGAGCTCCCCCAGCAGATCTTTCTTGTCCTTGGTTAGATCCCCCTGAGCGCGGAGAGCGCTGATCACACCTGCGTACGCCTCCAGCTCGAGCTTTCGCAGGATCCTTTTACACTCGTCCCTGCTGAGGTCCAGGAGCGTAGGCCACACCACCGGCATGGTGCCAGCCAGCTGTGGCTTCTCCTGCTGAATCATCCACTCTGAGAAAGTGACCTCTTCTGGAAACGATGGGAAATACTTTATCTTGTAGTTATCTTTAAGAGAACACTGACCTCTCCTTTAGCTCCTCTAGCTCCATTCCCTTCGGGTCCCTCCAATCCGCCATGACTATCCtctctc

Function

symbol description
emsy Predicted to act upstream of or within DNA repair; chromatin organization; and regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human EMSY (EMSY transcriptional repressor, BRCA2 interacting).

NR:

description
PREDICTED: protein EMSY-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244206 True 373 lncRNA 0.54 5 31451304 31456528

Neighbor

gene id symbol gene type direction distance location
LOC103032011 NA coding upstream 91036 31349241 ~ 31360268 (+)
mpzl1 LOC108423808 coding upstream 136865 31295065 ~ 31314439 (+)
ets2 ets2 coding upstream 206420 31237788 ~ 31244884 (+)
kcnj15 kcnj15 coding upstream 334609 31112015 ~ 31116695 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 500374 30935257 ~ 30950930 (+)
LOC103030242 chordc1 coding downstream 617099 32073627 ~ 32086443 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding downstream 655828 32112356 ~ 32187729 (+)
LOC103040837 rab38,LOC103040837,LOC108423822,LOC108277304,LOC107701102,LOC107718792,LOC107557212,LOC107693892 coding downstream 734320 32190848 ~ 32205776 (+)
map3k7cl map3k7cl coding downstream 824751 32281279 ~ 32298945 (+)
bach1 NA coding downstream 849929 32306457 ~ 32322948 (+)
G180264 NA non-coding upstream 25193 31423612 ~ 31426111 (+)
G180263 NA non-coding upstream 28096 31422470 ~ 31423208 (+)
G180260 NA non-coding upstream 55956 31394986 ~ 31395348 (+)
G180237 NA non-coding upstream 220667 31210212 ~ 31230637 (+)
G180233 NA non-coding upstream 330994 31119113 ~ 31120310 (+)
G180280 nhlrc3 non-coding downstream 6777 31463305 ~ 31464839 (+)
G180350 NA non-coding downstream 286183 31742711 ~ 31742990 (+)
G180399 NA non-coding downstream 424879 31881407 ~ 31881704 (+)
G180401 LOC108423819 non-coding downstream 436306 31892834 ~ 31895035 (+)
G180402 LOC108423819 non-coding downstream 457339 31913867 ~ 31914649 (+)
G180266 NA other upstream 17395 31433198 ~ 31433909 (+)
G180235 erg other upstream 300209 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3925863 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4534960 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4572221 26830637 ~ 26879083 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 808470 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1593714 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 2716396 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 2878048 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 3935993 35392521 ~ 35403624 (+)

Expression


Co-expression Network