G180280 (nhlrc3)


Basic Information

Item Value
gene id G180280
gene name nhlrc3
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31463305 ~ 31464839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244212
TTTCCCACATCAGTGACCCACACTGAGGGCTCCGGGGAGGAGGCGTTGGCCACGAAGATGCCGTGCGGCATTTCCAGAGTGCTGGTGTTCCAGGCTTGCAGGAATTCTCCATCCGTGCTGAACACCAGCACTTTAGGGATGTTCTCACCTCTCTGAGCCACATACACCACACCAGCCACCTGACTGACCGCCACCCCGAACACCTCCCCGGTGAAGTACTCCGGAAACCGGGGCCAGGAGATATCCAGCTTAAACAGGGGTCTCCCCACCACCTGGAAGTCCCTCCTACTGCCAGACGCTGCAGAGTGTGACATGAAGGTGGTGTACATGACGAACGTTACTAGAAAAAGTATAGCCATTGTTACAGTAATTAAACACAAGTTACTCTTTCTTCtcatacagaaaatataaaggATGTGTTTTCAGGGCAGAGCTTCTCTTCTCCACAGCTGAACCCGAGAGACTGCTCTCCCGTCACATGACTGGCTGAGCTCAGCTGAGCTAAGGGGCGGGCAGAGCTGGACGGTACTGAT

Function

symbol description
nhlrc3 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein polyubiquitination. Predicted to be located in azurophil granule lumen and extracellular region.

NR:

description
PREDICTED: NHL repeat-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU244212 True 533 lncRNA 0.54 3 31463305 31464839

Neighbor

gene id symbol gene type direction distance location
LOC103032011 NA coding upstream 103037 31349241 ~ 31360268 (+)
mpzl1 LOC108423808 coding upstream 148866 31295065 ~ 31314439 (+)
ets2 ets2 coding upstream 218421 31237788 ~ 31244884 (+)
kcnj15 kcnj15 coding upstream 346610 31112015 ~ 31116695 (+)
dyrk1a dyrk1a,dyrk1aa,LOC108411986,LOC107676490 coding upstream 512375 30935257 ~ 30950930 (+)
LOC103030242 chordc1 coding downstream 608788 32073627 ~ 32086443 (+)
LOC103040533 grm5,grm5a,LOC108423821,LOC107693909,LOC107720647,LOC107718729 coding downstream 647517 32112356 ~ 32187729 (+)
LOC103040837 rab38,LOC103040837,LOC108423822,LOC108277304,LOC107701102,LOC107718792,LOC107557212,LOC107693892 coding downstream 726009 32190848 ~ 32205776 (+)
map3k7cl map3k7cl coding downstream 816440 32281279 ~ 32298945 (+)
bach1 NA coding downstream 841618 32306457 ~ 32322948 (+)
G180278 emsy,LOC106603772 non-coding upstream 6777 31451304 ~ 31456528 (+)
G180264 NA non-coding upstream 37194 31423612 ~ 31426111 (+)
G180263 NA non-coding upstream 40097 31422470 ~ 31423208 (+)
G180260 NA non-coding upstream 67957 31394986 ~ 31395348 (+)
G180237 NA non-coding upstream 232668 31210212 ~ 31230637 (+)
G180350 NA non-coding downstream 277872 31742711 ~ 31742990 (+)
G180399 NA non-coding downstream 416568 31881407 ~ 31881704 (+)
G180401 LOC108423819 non-coding downstream 427995 31892834 ~ 31895035 (+)
G180402 LOC108423819 non-coding downstream 449028 31913867 ~ 31914649 (+)
G180403 NA non-coding downstream 454436 31919275 ~ 31919689 (+)
G180266 NA other upstream 29396 31433198 ~ 31433909 (+)
G180235 erg other upstream 312210 31139344 ~ 31151095 (+)
LOC103038954 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other upstream 3937864 27524302 ~ 27525441 (+)
rnasek rnasek,LOC107554319 other upstream 4546961 26913750 ~ 26916344 (+)
LOC103024073 LOC108424537 other upstream 4584222 26830637 ~ 26879083 (+)
G180460 cct8,LOC100304907,LOC107693911,LOC107701129 other downstream 800159 32264998 ~ 32273798 (+)
ufm1 ufm1,LOC107701138 other downstream 1585403 33050242 ~ 33067932 (+)
LOC103026201 LOC108277347,LOC108423746,LOC106604019 other downstream 2708085 34172924 ~ 34328970 (+)
LOC103024954 LOC108423745 other downstream 2869737 34334576 ~ 34507324 (+)
nsun5 nsun5,LOC102793237,LOC107686168 other downstream 3927682 35392521 ~ 35403624 (+)

Expression


Co-expression Network