G180285


Basic Information

Item Value
gene id G180285
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035916.1
NCBI id CM008319.1
chromosome length 36262418
location 31119112 ~ 31120476 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU244222
atatactgtatctgttaattaatagaataaataacattaataagaGCATTATAGCCAATGCAAAAGCACAGCCCTGGTCTAAACTATAATCCAGACGAATGTGAGCAGCAGGTTATTATTAAAGGAATGTGTAAGAGCAACGAGGAAGGACAATCAAGCAAGTCACaatcaaatataatgtaaaaagggCTTTTTAATTACAGAAGGAGGAAACAAAAACAGGTGCATGaacagttatataatattatatgtgttttttaaaagtattaaactacCTTATGTTGAGATGGACATATCAGACatatgagagagacagagttacGGAGGTGTGCATGATGAAGTTAAAAATAAGGCAGGGAGAGGGAGGGccagaggaggagagggagagcAAAGGCTGCAGGAAACTGAAAGGTGGAAAGTGGGCGGGGTCAGAAGGAAAAGGCTGAGTCTTAAAAAGTCAGGAGAGCAATGAGGGAATGAACCTGCATTAAGCAAGGGTTGAGAATTAATTTAAGTATTACTGCTTTGGATATAAATTGCCATATTTATCAGTATTATACTACGTAGTAGTTCATGTGGCATTATAGAGAGTAAAGAAGGGACATTCACTTGACTTTTAActtccaaagaaaaaaaaaataggaaaaagaaaatggaagaaTCTTGAAAATGACGTCTCTTTGTTTTGCTACGTTTGTGGAAAACTGGAAAGCAGAAAATGATTCTTTAAGTGTTTTCTTGTTAAATGACCTCAGACCTTTTTTTAGACAGAGGAGGATTTGTTTAAAATCAGTGCCTTACGGAAGCCGTTTCTCACACAGCCatgaaggttttttttacttttgccaAAGCACCAGTTTTGtgtgttcttatttttattttccgaGTCGCGAACGCTGTGCGTTTGTCAGATTGAAGTATACAATTCagtgttatatttctttttatatggCAGATATATAACTTATGCATTTAAACACTACGAGTTGATCTCAGCCAGCCAAAGACAGACATTTTTATGATagaatttagaattttaaaaaaGGGACCTGGACCAAAGTTGGCGAAAGCAATTGAACAATTGTGGCCTTTGAACTTTAAGCTCTATATATATAACGACTGTTTACAAAGTGCAAGCTATATGTGCTATTGTAAGATTTATAGTTTGTGTGAAAGCTGGTCTGGTATGGCATTCAGCACAGCCTCCTTGTTGATAGCAGGATTTACGTGTATCTGTAAGTCTCTGTAAGACACTGAGCAGCTGGACTGATGCTCTGAGATTGCTGACAAAAAGGAAGAAAGCATATACTTTCATAAATTAAATGGATTTTCTACTGAGTcaatttaataaactattttcaaacc

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU244222 True 1365 lncRNA 0.36 1 31119112 31120476

Neighbor

gene id symbol gene type direction distance location
kcnj6 kcnj6,LOC107690833,LOC107747353 coding downstream 61825 30972480 ~ 31057287 (-)
dscr3 dscr3 coding downstream 186298 30926168 ~ 30932814 (-)
pigp NA coding downstream 243522 30857757 ~ 30875590 (-)
hlcs hlcs coding downstream 270310 30801519 ~ 30848802 (-)
crybg3 NA coding downstream 385424 30677771 ~ 30733688 (-)
erg erg coding upstream 300 31120776 ~ 31221257 (-)
psmg1 psmg1 coding upstream 160495 31280971 ~ 31287789 (-)
LOC103031187 LOC108423810 coding upstream 205352 31325828 ~ 31341447 (-)
LOC103043924 emsy,LOC107690840 coding upstream 304495 31424971 ~ 31456554 (-)
nhlrc3 nhlrc3,LOC107671632 coding upstream 337962 31458438 ~ 31464792 (-)
G180231 NA non-coding downstream 20615 31098031 ~ 31098497 (-)
G180217 NA non-coding downstream 52732 31039016 ~ 31066380 (-)
G180197 NA non-coding downstream 199509 30911450 ~ 30919603 (-)
G180196 NA non-coding downstream 211188 30890668 ~ 30907924 (-)
G180122 NA non-coding downstream 540907 30577305 ~ 30578205 (-)
G180287 NA non-coding upstream 32070 31152546 ~ 31152937 (-)
G180295 LOC108423808 non-coding upstream 177291 31297767 ~ 31306347 (-)
G180309 NA non-coding upstream 219083 31339559 ~ 31397022 (-)
G180315 NA non-coding upstream 301909 31422385 ~ 31423190 (-)
G180338 NA non-coding upstream 444121 31564597 ~ 31564868 (-)
G180188 dyrk1a,LOC108411986,LOC107572954 other downstream 161345 30946946 ~ 30957767 (-)
G179816 NA other downstream 2268007 28850690 ~ 28851105 (-)
G179578 LOC108423781,LOC107751398,LOC107693988,LOC107577128,LOC107691633,LOC107588586 other downstream 3552420 27561845 ~ 27566692 (-)
G179583 zgc:101846,LOC106525086,LOC108416226,LOC101161532 other downstream 3593724 27524328 ~ 27525388 (-)
LOC103038646 zgc:194989,hist2h2l,LOC107719244,LOC107667924,LOC107574861,LOC108277172,LOC105900366,LOC103356012 other downstream 3594977 27523131 ~ 27524135 (-)
LOC103030555 LOC108423819,LOC107701125,LOC107718772,LOC107720543,LOC107556862,LOC107693906 other upstream 773726 31894202 ~ 32071924 (-)
tmem135 tmem135,LOC107701128,LOC107718730 other upstream 1119703 32240179 ~ 32262598 (-)
tiam1 tiam1,LOC108423828,LOC107718732 other upstream 1315849 32436325 ~ 32584343 (-)
LOC103033173 NA other upstream 2684764 33805240 ~ 33855632 (-)
LOC103042595 LOC106931471,LOC106940241,LOC106603438,LOC107659943,LOC101067200 other upstream 4312756 35433232 ~ 35470789 (-)

Expression


Co-expression Network