Gene
RNA
| Item | Value |
|---|---|
| gene id | G68639 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000012 |
| NCBI id | null |
| chromosome length | 13770000 |
| location | 503594 ~ 503802 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU78206 | True | 209 | lncRNA | 0.31 | 1 | 503594 | 503802 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000012_00427641_00472235 | NA | coding | downstream | 31017 | 427573 ~ 472577 (-) |
| CI01000012_00382850_00384215 | NA | coding | downstream | 119168 | 381711 ~ 384426 (-) |
| CI01000012_00340814_00363240 | HAAO | coding | downstream | 140354 | 340665 ~ 363240 (-) |
| CI01000012_00260363_00261340 | HCAR1-3 | coding | downstream | 242086 | 260296 ~ 261508 (-) |
| CI01000012_00223417_00223713 | NA | coding | downstream | 279445 | 223215 ~ 224149 (-) |
| CI01000012_00520655_00552630 | NA | coding | upstream | 16337 | 520139 ~ 553820 (-) |
| CI01000012_00647774_00648451 | NA | coding | upstream | 143784 | 647586 ~ 648945 (-) |
| CI01000012_00686760_00686993 | NA | coding | upstream | 182719 | 686521 ~ 686993 (-) |
| CI01000012_00689933_00695237 | NA | coding | upstream | 185292 | 689094 ~ 695264 (-) |
| CI01000012_00863269_00864644 | NA | coding | upstream | 358238 | 862040 ~ 865072 (-) |
| G68638 | NA | non-coding | downstream | 1646 | 501422 ~ 501948 (-) |
| G68636 | NA | non-coding | downstream | 4513 | 498833 ~ 499081 (-) |
| G68628 | NA | non-coding | downstream | 14017 | 489254 ~ 489577 (-) |
| G68627 | NA | non-coding | downstream | 14544 | 488442 ~ 489050 (-) |
| G68617 | NA | non-coding | downstream | 42533 | 460844 ~ 461061 (-) |
| G68644 | NA | non-coding | upstream | 13856 | 517658 ~ 517865 (-) |
| G68623 | NA | non-coding | upstream | 23137 | 526939 ~ 527306 (-) |
| G69154 | NA | non-coding | upstream | 74182 | 577984 ~ 579539 (-) |
| G69157 | NA | non-coding | upstream | 78992 | 582794 ~ 583234 (-) |
| G69193 | NA | non-coding | upstream | 123540 | 627342 ~ 627685 (-) |
| CI01000012_00178282_00181473 | NA | other | downstream | 323632 | 178182 ~ 183012 (-) |
| G69150 | NA | other | upstream | 61661 | 565463 ~ 566956 (-) |
| G69161 | NA | other | upstream | 83802 | 587604 ~ 588015 (-) |
| G69277 | NA | other | upstream | 226118 | 729920 ~ 730465 (-) |
| G69332 | NA | other | upstream | 271562 | 775364 ~ 775879 (-) |
| CI01000012_01139864_01192154 | TTC7A | other | upstream | 631874 | 1135676 ~ 1192154 (-) |
